Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36160 3800 / 0 GSD1, PAS3, GK, EMB22, AT-ACC1, ACC1 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) AT1G36180 3689 / 0 ACC2 acetyl-CoA carboxylase 2 (.1.2) AT1G03090 231 / 6e-63 MCCA methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) AT5G35360 216 / 8e-60 CAC2 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) AT1G29900 63 / 3e-09 VEN3, CARB VENOSA 3, carbamoyl phosphate synthetase B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G092700 [exp] 4338 / 0 AT1G36160 3806 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.018G146300 [exp] 222 / 6e-62 AT5G35360 911 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.006G078200 [exp] 219 / 9e-61 AT5G35360 926 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.005G213300 [exp] 219 / 4e-59 AT1G03090 1099 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Potri.010G023100 [exp] 56 / 6e-07 AT1G29900 1902 / 0.0 VENOSA 3, carbamoyl phosphate synthetase B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006934 [exp] 3760 / 0 AT1G36160 3698 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Lus10024748 [exp] 2431 / 0 AT1G36160 2397 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Lus10024747 [exp] 630 / 0 AT1G36160 632 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Lus10017534 [exp] 221 / 1e-61 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028196 [exp] 218 / 6e-60 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028753 [exp] 225 / 1e-59 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10003679 [exp] 220 / 1e-59 AT2G01690 614 / 0.0 ARM repeat superfamily protein (.1.2) Lus10042623 [exp] 211 / 2e-56 AT1G03090 1064 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Lus10042899 [exp] 199 / 6e-54 AT5G35360 821 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10022078 [exp] 132 / 8e-34 AT1G03090 405 / 4e-138 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [poplar] [flax] ClpP_crotonase PF01039 [poplar] [flax] Carboxyl_trans Carboxyl transferase domain CL0127 [poplar] [flax] PF08326 [poplar] [flax] ACC_central Acetyl-CoA carboxylase, central region
Representative CDS sequence Show only first row Show all	>Potri.005G169100.4 pacid=42804404 polypeptide=Potri.005G169100.4.p locus=Potri.005G169100 ID=Potri.005G169100.4.v4.1 annot-version=v4.1 ATGTCAGAATCACTAAGGAGACCGCCTATAACCTTGGGTGTGGGGCGTGGAAATGGGTACATAAATGGGGTAGCTTCAATAAGGAGCCCCGCTACAATAT CCCTAGTGGATCAATTCTGCCATGCCCTCGGAGGGAAGAAGCCAATCCATAGTATTTTAATTGCAAACAATGGAATGGCAGCTGTCAAGTTTATACGTAG CATTAGGACATGGGCTTATGAAACATTTGGTACTGATAAAGCTCTTCTGTTGGTGGCTATGGCTACTCCAGAAGACATGAGAATCAATGCAGAACATATT CGAATAGCTGATCAGTTTGTGGAAGTTCCTGGTGGGACAAACAATAATAACTATGCCAATGTACAGCTCATTGTAGAGATGGCAGAGATAACACATGTTG ATGCGGTTTGGCCTGGTTGGGGTCATGCTTCTGAGAACCCTGAGCTTCCAGATGCTCTGGATGCAAAGGGGATTGTATTTCTTGGCCCCCCATCTACATC AATGGCAGCACTGGGAGATAAGATTGGCTCATCTTTGATTGCTCAAGCAGCAGATGTTCCTACCCTACCATGGAGTGGTTCTCATGTGAAAATTTCTTCA GAAAGTTGCTTGGTTATCATCCCAGATGAGATATATAGGGAAGCATGTGTATATACAACTGAGGAAGCAATCGCTAGCTGTCAAGTTGTCGGTTACCCTG CGATGATAAAGGCATCATGGGGTGGTGGTGGTAAAGGCATAAGAAAGGTTCATAATGATGATGAAGTCAGAGCGTTGTTCAAGCAAGTTCAGGGTGAAGT CCCAGGTTCCCCGATATTTATAATGAAGGTTGCTTCTCAGAGTCGACATTTAGAAGTCCAGTTACTATGTGATCAGTATGGAAATGTAGCAGCTTTGCAT AGCCGTGATTGCAGCATTCAGAGGCGGCACCAGAAAATAATTGAGGAGGGTCCAATTACTGTTGCACCACCGGAGACAGTAAAAAAACTAGAACAGGCCG CGCGGAGGTTAGCGAAATGTGTGAATTATGTGGGAGCAGCCACTGTTGAGTATTTGTATAGCATGGACACTGGCGAATATTACTTCTTAGAACTCAACCC TCGGTTACAGGTGGAGCACCCTGTCACTGAGTGGATTGCTGAAATAAATCTACCTGCAGCCCAGGTTGCAGTGGGGATGGGTATTCCTCTCTGGCAAATT TCAGAGATAAGGCGATTTTATGGAATGGAATATGGTGGAGGCTATGATGCATGGAGGAAAACTTCATTGGTTGCCACCCCTTTTGATTTTGACAAGGCAG AGTCCATAAGGCCAAAAGGTCATTGTGTAGCTGTACGTGTGACGAGTGAGGATCCGGATGATGGTTTTAAGCCTACAAGCGGAAAAGTACAGGAACTAAG TTTTAAAAGCAAGCCAAATGTGTGGGCTTACTTCTCTGTTAAGTCTGGAGGAGGCATTCATGAATTCTCAGATTCTCAATTTGGACATGTTTTCGCATTT GGGGAATCTAGAGCTTTGGCTATAGCAAATATGGTCCTTGGACTTAAAGAAATTCAAATTCGTGGAGAAATCCGTACAAATGTTGATTACACAATTAATC TTTTACATGCTTCAGATTACAGAGACAATAAAATCCACACAGGTTGGTTGGACAGTAGAATTGCGATGCGTGTTCGAGCAGAGAGGCTCCCTTGGTATCT CTCTGTTGTTGGAGGGTCTTTATATAAAGCATGTGCTAGCAGTGCAGCTCTGGTTTCTGATTATATTGGTTATCTGGAAAAGGGGCAAATTCCCCCCAAG CACATATCTCTTGTTAACTCTCAAGTTTCATTGAACATTGAAGGAAGCAAATACACGATTGACATGGTTAGAGAGGGGCCTGGTAGCTATAGATTGAGGA TGAACGAATCACAGATTGAAGTAGAGATACATACTTTACGTGATGGAGGTCTATTGATGCAGCTGGATGGGAACAGTCATGTGATATATGCAGAGGAAGA AGCAGCTGGAACTCGCCTCCTCATTGACGGAAGGACTTGCTTGTTACAGAATGATCATGATCCATCAAAGTTAGTGGCAGAGACACCATGCAAGTTGCTG AGGTATTTGGTTTCAGATGGTAGTCATGTTGATGCAGACATGCCATATGCTGAGGTTGAAGTTATGAAGATGTGCATGCCTCTTCTTTCACCTGCTTCTG GAGTTATTCAGTTCAAAATGTCCGAAGGTCAAGCAATGCAGGCTGGTGAGCTTATAGCAAGGCTTGATCTTGATGATCCATCAGCTGTACGAAAAGCTGA GCCTTTTCATGGGAGCTTCCCGGTTCTAGCCCCTCCAACTGCAATTTCTGGAAAAGTTCATCAGAGATGTGCTGCAAGTCTTAATGCAGCCCGGATGATT CTTGCTGGTTATGATCATAATATTGATGAAGTGGTGCAAAACTTGCTTGTTTGTCTTGATAGTCCAGAACTCCCTTTCCTCCAATGGCAAGAGTGCTTGG CTGTTCTCGCAACCCGCCTTCCCAAAGATCTTAGAACTGCGTTGGAAGCAAAATTCAGAGAGTTTGAGGGAATTTCAAGCTCCTTGAACATTGATTTCCC TGCCAAATTATTGAAGGGCGTGCTTGAGGTCCATTTATCCTCTTGTCCAGAAAAAGAAAAAGGAGCTCATGAAAGGCTCGTTGAACCTTTGATGAGTCTT GTGAAGTCTTATGAAGGTGGAAGAGAGAGTCATGCCCGTGTTATTGTTCAGTCACTTTTTGAAGAGTATTTATCTGTTGAAGAGTTATTCAGTGATAACA TCCAGGCTGATGTGATTGAACGTCTTCGACTTCAGTATAAGAAAGATTTACTGAGGGTTGTGGACATTGTACTTTCTCATCAGGGTGTCAGAAGTAAAAA TAAGCTAATACTACGCCTCATGGAACAACTTGTTTATCCCAGTCCTGCTGCATATAGGGACAAACTAATCCGCTTCTCTCAACTCAACCATACAAATTAT TCTGAGCTTGCACTAAAGGCTAGTCAACTGCTAGAACATACCAAACTGAGTGAACTTCGTTCTACCATTGCAAGAAGCCTTTCTGAATTGGAGATGTTTA CAGAGGATGGTGAAAATATGGATACTCCCAAGAGGAAAAGTGCCATTAATGAACGAATGGAGGATCTTGTTAGTGCTCCTTTAGCCGTTGAGGATGCCCT TGTGGGTTTGTTTGATCATAGTGACCACACCCTTCAAAGGCGAGTGGTAGAAACTTATGTCCGTAGACTATACCAGCCCTATCTTGTGAAGGGGAGTGTC AGGATGCAGTGGCACAGATCTGGTCTTATTGCTTCATGGGAGTTCTTGGAAGAACACATTGAGAGAAAGAATGGCTTTGAAGATCAAATGCCAGATAAAC CACTAGTAGAAAAGCACCGTGAGCAAAAATGGGGAGCTATGGTTATTATTAAATCTCTTCAATTTTTGCCAGCTATCATTAGTGCCGCATTACTGGAGAC AACCCATGATCCTCGTGAAGTAGTTTTAAATGGATCTGTAGAACCAACTGGCTTTGGTAATATGATGCACATTGCTTTGGTGGGCATCAACAATCCGATG AGTCTACTCCAGGATAGTGGTGATGAGGACCAAGCTCAGGAGAGAATAAAAAAATTAGCCAAAATACTTAAGGAGCAAGAGGTGAGCTCCAGTTTACACA GTGCAGGTGTTCGTGTTATTAGTTGCATCATACAGAGAGACGAAGGGCGAGCTCCTATGAGGCATTCCTTTCACTGGTCAGTGGAAAAGCTATATTATGC AGAAGAGCCTCTGCTGCGTCACCTAGAACCTCCGCTATCCATCTACCTTGAATTGGACAAGCTTAAAGGCTATGAAGATATACATTATACTCTATCCCGT GATCGGCAATGGCATTTGTACACTGTTGTAGACAAGCCAGGGCCAATCCGGAGAATGTTCCTTAGAACACTTGTAAGACAGCCAACAATGAATGAAGGGT TTACTGCATATCAAGGGCTGGGAATAGAAACAACTGGTACCCAATGGACTGTTTCCTTAACTTCAAGGAGCATTTTGAGGTCTTTGGTGACTGCACTGGA GGAATTGGAGCTTAATGTGCATAATGCTACTGTCAAACCTGACCATGCTCATATGTACCTTTGTATCTTACGTGAGCAACAAATAGATGATCTTGTGCCA TACCCAAAGAAACTTGACATAGATGCTGAGCAAGAAGAAGTGGCAGTAGAGGCAATCTTGGAAGGATTGGCTAGGGAAATCCATGCGGCTGTTGGTGTGA GAATGCATAGATTGAGTGCTTGTGAGTGGGAAGTGAAGCTCTGGATGGCGTCATCTGGACAGGCAAATGGTGCATGGAGGATTGTCGTCACAAATGTGAC TGGTCACACCTGTGCTGTGCATATATACCGGGAACTCGAGCATACCAGCAAGCAGAAAGTGGTGTACCATTCAATCTCTGTGCATGGTCCTCTGCATCTT GTACCAGTGAATGCACACTATCAACCTTTGGGATCACTTGATCGAAAACGTCTGTTGGCAAGGAGAAGCAGCACCACTTACTGCTACGATTTTCCACTGG CTTTTGAGACAGTCTTGGAACAAATATGGGCATCCCAATTTTCAGGTATGAAAAAACCTAAGGATAAAGTTATAAAGGTGACAGAGCTCGTATTTGCTGA TGAAAAAGGTAGCTGGGGTACACCTCTTGTTTCCTTGGAGCGTCCAGCTGGGCTCAATGATTTTGGCATGGTAGCTTGGTGCATGGAAATACTAACTCCT GAGTTCCCTTTGGGAAGGACAATTTTGGTAGTAGCAAATGACGTGACCTTCAAAGCGGGGTCTTTTGGCCAAAGAGAGGATGCATTCTTTCTTGCAGTGA CTGATCTTGCCTGCAATAAGAAAATTCCACTGATTTATTTGGCAGCGAACTCAGGTGCCCGTATTGGGGCTGCTGATGAAGTCAAATCCTGCTTTAAAGT TGGTTGGTCAGATGAAGTTTTCCCCGATCGTGGCTTTCAGTATGTATATTTAAGTCCTGAGGATCATGCTCGGATTGGATCATCAGTGATAGCGCATGAA TTGAAGCTGGAGAATGGAGAAACAAGATGGGTGATAGAAGCCATTGTTGGGAAGGAGGATGGCCTGGGGGTAGAGAATTTATCTGGAAGTGGGGCCATTG CTAGTGCTTATTCTAGAGCATACAACGAAACCTTTACCTTGACTTATGTGACTGGCAGAACTGTAGGAATTGGTGCTTATCTCACTCGGCTTGGAATGCG GTGCATACAGAGGCTTGATCAGCCCATTATTTTAACCGGTTTTTCTGCTTTAAACAAACTTCTTGGTCGCGAGGTATACAGCTCACACATGCAACTTGGT GGACCAAAAATTATGGCAACCAACGGGGTAGTTCATCTAACTGTCTCAGATGATCTTGAAGGGGTATCAGCTATCTTGAAGTGGCTAAGCTGTATTCCTC CTTGTGTGGGCGGTGCGCTTCCCATTTTAAGTCCATCAGATTCTCCAGAAAGACCTGTGGAGTACTTCCCAGAAAACTCATGTGATCCACGGGCTGCTAT TTGTGGTATTTTTGATGGCAATGGGAAGTGGCTGGGTGGTATTTTTGACAAGGATAGCTTTGTTGAGACATTGGAAGGCTGGGCAAGGACAGTTGTGACT GGACGAGCAAAGCTTGGAGGAATCCCTGTTGGAATAGTAGCTGTTGAGACACAGACAGTTATGAAAGTGATCCCTGCTGACCCAGGACAGCTTGATTCCC ATGAGAGGGTTGTTCCTCAGGCTGGGCAAGTATGGTTTCCAGATTCTGCAACCAAAACAGCTCAAGCAATATTTGATTTCAATAGAGAAGAGCTACCGCT TTTCATTTTAGCCAACTGGAGAGGTTTTTCTGGTGGGCAGAGAGACCTCTTTGAAGGTATCCTCCAGGCAGGCGCAACCATAGTTGAGAACCTTAGAACA TACAAACAACCTGTTTTTGTGTACATTCCTATGATGGGTGAGCTTCGTGGCGGGGCATGGGCTGTTCTGGATAGTAAGATCAATTCAGATCACATTGAAA TGTATGCAGATCGAACAGCTAAAGGTAATGTCCTTGAGCCAGAAGGAATGATCGAGATCAAATTCAGGACAAAGGATCTGCTTGAGTGCATGGGTAGGCT TGATCAACAGCTGATCAATTTGAAGGCAAAACTTCAGGAAACCAGGAGCAGTGCACCATATGGAATGGTCGATTCTCTCCAACAGCAGATAAAAACTCGT GAAAAGCAGCTTTTGCCGGTCTACACTCAGGTAGCCACCAAATTCGCCGAGCTTCATGATTCTTCTCTAAGAATGGAGGCAAAGGGTGTTATAAGAGAAG TTGTGGACTGGGCTAGATCACGCCTTTTTTTCTGCAGAAGGTTATGTAGGAGAATTGCTGAGTGTTCGCTGATCAAGGATGTGATAGATGCAGCAGGTGA GCAACTGTTACATAAATCTGCAATGGACATGATCAAAACATGGTTCTTGAATTCGGATATTGCAAAAGGGAGAGAAGATGCTTGGATGGATGATGAAGCA TTCTTTGCATGGAAGGATGATTCAGGAAATTATGAAGCAAAGCTACAGGAGTTGCGGGCCCACAAGGTATTGCTTCAGTTAACAAACATTGGTGAGTCTC AGTCAGATTTGAAAGCTCTACCACAAGGTCTTGCTGCCCTTCTAAGCAAGGTGGAGCCATCAAGCAGAGAACGATTGGTTGATGAACTTCGTAAGGTGCT TGGTTGA
AA sequence Show only first row Show all	>Potri.005G169100.4 pacid=42804404 polypeptide=Potri.005G169100.4.p locus=Potri.005G169100 ID=Potri.005G169100.4.v4.1 annot-version=v4.1 MSESLRRPPITLGVGRGNGYINGVASIRSPATISLVDQFCHALGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTDKALLLVAMATPEDMRINAEHI RIADQFVEVPGGTNNNNYANVQLIVEMAEITHVDAVWPGWGHASENPELPDALDAKGIVFLGPPSTSMAALGDKIGSSLIAQAADVPTLPWSGSHVKISS ESCLVIIPDEIYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALH SRDCSIQRRHQKIIEEGPITVAPPETVKKLEQAARRLAKCVNYVGAATVEYLYSMDTGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI SEIRRFYGMEYGGGYDAWRKTSLVATPFDFDKAESIRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAF GESRALAIANMVLGLKEIQIRGEIRTNVDYTINLLHASDYRDNKIHTGWLDSRIAMRVRAERLPWYLSVVGGSLYKACASSAALVSDYIGYLEKGQIPPK HISLVNSQVSLNIEGSKYTIDMVREGPGSYRLRMNESQIEVEIHTLRDGGLLMQLDGNSHVIYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLL RYLVSDGSHVDADMPYAEVEVMKMCMPLLSPASGVIQFKMSEGQAMQAGELIARLDLDDPSAVRKAEPFHGSFPVLAPPTAISGKVHQRCAASLNAARMI LAGYDHNIDEVVQNLLVCLDSPELPFLQWQECLAVLATRLPKDLRTALEAKFREFEGISSSLNIDFPAKLLKGVLEVHLSSCPEKEKGAHERLVEPLMSL VKSYEGGRESHARVIVQSLFEEYLSVEELFSDNIQADVIERLRLQYKKDLLRVVDIVLSHQGVRSKNKLILRLMEQLVYPSPAAYRDKLIRFSQLNHTNY SELALKASQLLEHTKLSELRSTIARSLSELEMFTEDGENMDTPKRKSAINERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSV RMQWHRSGLIASWEFLEEHIERKNGFEDQMPDKPLVEKHREQKWGAMVIIKSLQFLPAIISAALLETTHDPREVVLNGSVEPTGFGNMMHIALVGINNPM SLLQDSGDEDQAQERIKKLAKILKEQEVSSSLHSAGVRVISCIIQRDEGRAPMRHSFHWSVEKLYYAEEPLLRHLEPPLSIYLELDKLKGYEDIHYTLSR DRQWHLYTVVDKPGPIRRMFLRTLVRQPTMNEGFTAYQGLGIETTGTQWTVSLTSRSILRSLVTALEELELNVHNATVKPDHAHMYLCILREQQIDDLVP YPKKLDIDAEQEEVAVEAILEGLAREIHAAVGVRMHRLSACEWEVKLWMASSGQANGAWRIVVTNVTGHTCAVHIYRELEHTSKQKVVYHSISVHGPLHL VPVNAHYQPLGSLDRKRLLARRSSTTYCYDFPLAFETVLEQIWASQFSGMKKPKDKVIKVTELVFADEKGSWGTPLVSLERPAGLNDFGMVAWCMEILTP EFPLGRTILVVANDVTFKAGSFGQREDAFFLAVTDLACNKKIPLIYLAANSGARIGAADEVKSCFKVGWSDEVFPDRGFQYVYLSPEDHARIGSSVIAHE LKLENGETRWVIEAIVGKEDGLGVENLSGSGAIASAYSRAYNETFTLTYVTGRTVGIGAYLTRLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLG GPKIMATNGVVHLTVSDDLEGVSAILKWLSCIPPCVGGALPILSPSDSPERPVEYFPENSCDPRAAICGIFDGNGKWLGGIFDKDSFVETLEGWARTVVT GRAKLGGIPVGIVAVETQTVMKVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQAIFDFNREELPLFILANWRGFSGGQRDLFEGILQAGATIVENLRT YKQPVFVYIPMMGELRGGAWAVLDSKINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKDLLECMGRLDQQLINLKAKLQETRSSAPYGMVDSLQQQIKTR EKQLLPVYTQVATKFAELHDSSLRMEAKGVIREVVDWARSRLFFCRRLCRRIAECSLIKDVIDAAGEQLLHKSAMDMIKTWFLNSDIAKGREDAWMDDEA FFAWKDDSGNYEAKLQELRAHKVLLQLTNIGESQSDLKALPQGLAALLSKVEPSSRERLVDELRKVLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Potri.005G169100 [exp]	0	1
AT2G20050			protein serine/threonine phosp...		Potri.018G084900 [exp]	8.66	0.6060
AT5G58000			Reticulon family protein (.1)		Potri.006G185700 [exp]	11.40	0.6266
AT5G56540		ATAGP14, AGP14	arabinogalactan protein 14 (.1...		Potri.003G220900 [exp]	16.73	0.5691
AT5G14720			Protein kinase superfamily pro...		Potri.001G349300 [exp]	35.32	0.5519
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Potri.009G060800 [exp]	43.30	0.5509	CESA4.5
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Potri.004G132900 [exp]	46.01	0.5157
AT3G13690			Protein kinase protein with ad...		Potri.003G034900 [exp]	54.35	0.5512
AT2G22600			RNA-binding KH domain-containi...		Potri.007G011900 [exp]	57.96	0.5483
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Potri.013G075300 [exp]	62.16	0.5172
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G006800 [exp]	66.09	0.5198

Compare expression of checked genes

Potri.005G169100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.