Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22110 93 / 1e-21 structural constituent of ribosome (.1) AT1G77932 56 / 8e-10 Protein of unknown function (DUF3049) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G092000 [exp] 127 / 2e-34 AT1G22110 130 / 2e-36 structural constituent of ribosome (.1) Potri.005G166900 [exp] 117 / 2e-30 AT1G22110 141 / 5e-40 structural constituent of ribosome (.1) Potri.009G162800 [exp] 51 / 3e-07 AT5G22390 74 / 8e-16 Protein of unknown function (DUF3049) (.1) Potri.005G037600 [exp] 45 / 4e-05 AT1G54740 104 / 7e-26 Protein of unknown function (DUF3049) (.1) Potri.013G027100 [exp] 45 / 5e-05 AT1G54740 103 / 1e-25 Protein of unknown function (DUF3049) (.1) Potri.009G016600 [exp] 42 / 0.0007 AT5G22090 195 / 4e-56 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020626 [exp] 53 / 1e-07 AT5G22390 96 / 4e-24 Protein of unknown function (DUF3049) (.1) Lus10004863 [exp] 51 / 3e-07 AT5G22390 97 / 9e-25 Protein of unknown function (DUF3049) (.1) Lus10013353 [exp] 49 / 4e-06 AT5G22090 199 / 8e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10004098 [exp] 45 / 6e-05 AT5G22090 200 / 3e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11250 [poplar] [flax] FAF Fantastic Four meristem regulator
Representative CDS sequence Show only first row Show all	>Potri.005G169900.1 pacid=42804234 polypeptide=Potri.005G169900.1.p locus=Potri.005G169900 ID=Potri.005G169900.1.v4.1 annot-version=v4.1 ATGATATGGACATCAGCGTCGCCATCTCCCATGCGATTCCCAAGAGAATGGCCAGCCTATTCTGGTCTGAAAACCCTGTTACATTACTCACGAGAACCTG ATCAAAACCTAACTCATACTTGCTACATTCTTCATTCCTATATGATACCTGCACCTTCACCACCATCGTGGTCTCCTTCTCCACCTCTAGTTCGATCGCT CACTAATAATTCCTCGTCATACTCCTCTTGTTCTTCTGCATTGGATGATTTGATTGGGACTGAGAGTGGTGTTTACATGAACGCCAATATTGAAGAAGAA ACTGCACAAATGGAGAAGCTAGAATCTTATCATCACCAATACAAGAGAAAACAGCGTTATGCGACGAGAAAGAAATATCCTCCACCTATACCCTTACTTG CAAGAACGGGGAATTTGCCTGGTCATATGCCTTGGATTTTAACTAGGCACTACATCGATGGAAGGCTGGTCCTTGTAGAAGAGAGAGTGAAGAATCATGA GTATTTTGAAGCACAGAGAGAAAATGGTCGTCTCGTTTTGAATATTGTACCCTTGGACGATAAGATAACATGTTCCCATTTTGTTTCTAAAAATGAAGAG CAGAAAGAGCTTCAAGATGTTGATTCTCTTGAAAAAAACTCAGATCAGGAATTTGATGATGATGATGAAGAAGAAGAAGAAGAAGGAAGAGAAGCATATC AAGAAATTGAACTTGGAAGTGATGATTATGTTGGTAATTTGGAAGACAGAGTCCCGGTGGATGATGAGGTAACAAATGAGAAATCAGTGACAGCATCTGC TTCCTTGCCTAAATCAAGTTTGAAGAATGGGAATGAGAAGTCTGGAGATCTACGCAAGTGTTCTACTTATGCGGGTAGGATGATATCGGACATTAATCTA CCTTGCAATGCTAATGCCCATCGAAATGCTGGTGAATGTATGAATAATATTCATGACCCGGGCTCAGCATCTTTTGACTTGGCCAATATTCTTCATAAGA TGACCACCGTGGTTTAG
AA sequence Show only first row Show all	>Potri.005G169900.1 pacid=42804234 polypeptide=Potri.005G169900.1.p locus=Potri.005G169900 ID=Potri.005G169900.1.v4.1 annot-version=v4.1 MIWTSASPSPMRFPREWPAYSGLKTLLHYSREPDQNLTHTCYILHSYMIPAPSPPSWSPSPPLVRSLTNNSSSYSSCSSALDDLIGTESGVYMNANIEEE TAQMEKLESYHHQYKRKQRYATRKKYPPPIPLLARTGNLPGHMPWILTRHYIDGRLVLVEERVKNHEYFEAQRENGRLVLNIVPLDDKITCSHFVSKNEE QKELQDVDSLEKNSDQEFDDDDEEEEEEGREAYQEIELGSDDYVGNLEDRVPVDDEVTNEKSVTASASLPKSSLKNGNEKSGDLRKCSTYAGRMISDINL PCNANAHRNAGECMNNIHDPGSASFDLANILHKMTTVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22110			structural constituent of ribo...		Potri.005G169900 [exp]	0	1
AT4G16447			unknown protein		Potri.011G086300 [exp]	3.31	0.7990
AT1G09060			Zinc finger, RING-type;Transcr...		Potri.005G026950 [exp]	6.48	0.7575
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Potri.003G218300 [exp]	6.70	0.7721
					Potri.013G104501 [exp]	10.00	0.7227
AT3G55260		HEXO1, ATHEX2	beta-hexosaminidase 1 (.1)		Potri.008G049801 [exp]	13.49	0.6489
AT1G34065		SAMC2	S-adenosylmethionine carrier 2...		Potri.002G063901 [exp]	13.85	0.5949
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Potri.008G128301 [exp]	15.71	0.5574
AT4G27790			Calcium-binding EF hand family...		Potri.015G010300 [exp]	26.45	0.5150
AT1G05580		ATCHX23	cation/H+ exchanger 23, cation...		Potri.007G111400 [exp]	27.12	0.5061	ATCHX23.1
AT3G20190			Leucine-rich repeat protein ki...		Potri.004G170274 [exp]	28.91	0.5436

Compare expression of checked genes

Potri.005G169900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.