Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22040 592 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 149 / 4e-40 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30090 121 / 4e-30 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G24540 108 / 1e-25 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 101 / 2e-23 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT3G27150 96 / 4e-21 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G21950 89 / 5e-19 SKIP6 SKP1 interacting partner 6 (.1) AT5G60570 89 / 5e-19 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G16250 87 / 2e-18 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G63220 86 / 4e-18 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G091900 [exp] 888 / 0 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 155 / 3e-42 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 155 / 4e-42 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G193800 [exp] 130 / 2e-33 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G104300 [exp] 115 / 4e-28 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G059200 [exp] 104 / 3e-24 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G176000 [exp] 103 / 3e-24 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G004500 [exp] 103 / 7e-24 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.018G007100 [exp] 100 / 6e-23 AT2G24540 408 / 4e-142 ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020960 [exp] 541 / 0 AT1G22040 499 / 7e-175 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10025357 [exp] 538 / 0 AT1G22040 497 / 6e-174 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 153 / 2e-41 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 150 / 2e-40 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 132 / 4e-34 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 125 / 1e-31 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10022061 [exp] 105 / 9e-25 AT3G63220 476 / 7e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10023608 [exp] 101 / 3e-23 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017821 [exp] 101 / 4e-23 AT3G61350 328 / 3e-110 SKP1 interacting partner 4 (.1) Lus10002112 [exp] 94 / 9e-21 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.005G170000.2 pacid=42804544 polypeptide=Potri.005G170000.2.p locus=Potri.005G170000 ID=Potri.005G170000.2.v4.1 annot-version=v4.1 ATGGGAGGTGTTTTGAGTTTGGTCGGTTCCAAATGCAGGACAAGCGAGTATAATGAGATGTTAAATAATGGAAGCTGCAAGAGGCAAAAGACATCCTCTA TTTTTTATGATGAGGAAAGCCCAAGATTGATTCCGTTTCTTCCTGATGAGTTATCCATCCAGATACTTGCTAGACTCCCCAGATATTGCTACTTCAACCT GCGATTGGTTTCAAAGAAGTGGAAGGCAACGTTTGAGAGTGCTGAGCTGTTTAAAGTTAGAAAAGAACTTGGATTAACAGAAGAATGGCTATATGTATTG ATTAAGGATGAAGCAGATAAACTATCATGGCATGCTTTGGACCCTTTGTCAAGAAATTGGCAGAGGTTGCCTCCAATGCCGAATGTTGTTTGTGCAGACG AATCTAAAAGTGGGTTTTCTGGGCTTTGGTTGTGGAACGTTGTTGGGTCAGGCATTAAAATTGCTGAAGCCGTAAGGAGTTGGCTGGGGCAAAAGGACAC GCTGGATCAAATGCCTTTCGGTGGTTGTTCCGTCAGTGCTGTTGATGGATGCCTCTATGTGCTTGGTGGGTTCTCTAGAGCTACCACCATGAGATGCGTC TGGCGGTTCGATCCAATCTCAAACAAATGGAGCAAAACGACTTCCATGTCTACAGGTAGGGCTTACTGTAAGACAAGCATTTTAAATAACAAGCTATATG TTGTTGGTGGGGTTAGTCAGGGCCGAGGGGGATTGACTCCTCTTCAATCCGCTGAAGTATTTGACCCTTGCACGGGTACATGGTCTGATGTTCCAAGCAT GCCATTCTCAAGAGCTCAATTGGTGCCCACTGCCTATTTGTCTGACCTGCTAAAGCCTATAGCCACTGGGATGACTTCTTACATGGGAAGATTATTTGTC CCTCAAAGTTTATACTCGTGGCCCTTCATTGTTGATGTCGGTGGTGAAATATACAATCCTGAAACAAATTCATGGGCTGAAATGCCAACTGGCATGGGAG AAGGCTGGCCTGCACGGCAGGCAGGTACAAAATTGAGCGTAGTGGTAGATGGTGAATTATATGCATTTGATCCGTCTACTTCTCCAAACAGTGGTAAGAT CAAGGTATATGATCAGAAAGAAGATACATGGAAAGTTGCCATTGGAAAAGTCCCTGTTGCTGATTATACAGAATCCGACTCTCCATATTTGCTCACGGGT TTTCATGGAAAGATTCATGTCCTCACAAAAGATGCCAATCATAACATTGCAGTTATGCAGGCTGATGTGCAAGATAATTTGGGTTCCCCATTGAGCTCAA CTTCTGTTTCTGCCAAGTCCTTGCATGACCATCCTGACTCATCAGAAACGGTTTTTTGGAAGGTCATAGACAGTAAAGATTTTGGGTCTGCGGAATTTGT CAGTTGTCAAGTTCTTGATGTATAG
AA sequence Show only first row Show all	>Potri.005G170000.2 pacid=42804544 polypeptide=Potri.005G170000.2.p locus=Potri.005G170000 ID=Potri.005G170000.2.v4.1 annot-version=v4.1 MGGVLSLVGSKCRTSEYNEMLNNGSCKRQKTSSIFYDEESPRLIPFLPDELSIQILARLPRYCYFNLRLVSKKWKATFESAELFKVRKELGLTEEWLYVL IKDEADKLSWHALDPLSRNWQRLPPMPNVVCADESKSGFSGLWLWNVVGSGIKIAEAVRSWLGQKDTLDQMPFGGCSVSAVDGCLYVLGGFSRATTMRCV WRFDPISNKWSKTTSMSTGRAYCKTSILNNKLYVVGGVSQGRGGLTPLQSAEVFDPCTGTWSDVPSMPFSRAQLVPTAYLSDLLKPIATGMTSYMGRLFV PQSLYSWPFIVDVGGEIYNPETNSWAEMPTGMGEGWPARQAGTKLSVVVDGELYAFDPSTSPNSGKIKVYDQKEDTWKVAIGKVPVADYTESDSPYLLTG FHGKIHVLTKDANHNIAVMQADVQDNLGSPLSSTSVSAKSLHDHPDSSETVFWKVIDSKDFGSAEFVSCQVLDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22040			Galactose oxidase/kelch repeat...		Potri.005G170000 [exp]	0	1
AT1G55265			Protein of unknown function, D...		Potri.001G008320 [exp]	3.00	0.7028
AT1G11020			RING/FYVE/PHD zinc finger supe...		Potri.018G073400 [exp]	3.16	0.6919
AT5G42990		UBC18	ubiquitin-conjugating enzyme 1...		Potri.005G232100 [exp]	3.87	0.6414
AT3G51990			Protein kinase superfamily pro...		Potri.001G260800 [exp]	5.47	0.6381
AT1G64355			unknown protein		Potri.001G093001 [exp]	10.39	0.6916
AT2G20120		COV1	CONTINUOUS VASCULAR RING, Prot...		Potri.006G158100 [exp]	20.97	0.6134
AT4G10100		CNX7, SIR5	"co-factor for nitrate, reduct...		Potri.019G070801 [exp]	21.97	0.6252
AT5G58740			HSP20-like chaperones superfam...		Potri.001G251204 [exp]	39.11	0.5477
AT1G73030		CHMP1A, VPS46.2	CHARGED MULTIVESICULAR BODY PR...		Potri.003G045300 [exp]	40.59	0.5933
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Potri.006G253500 [exp]	42.24	0.5946	RDR6.1

Compare expression of checked genes

Potri.005G170000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.