Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18520 717 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 290 / 4e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 282 / 7e-85 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 277 / 1e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02330 277 / 3e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53360 274 / 4e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 275 / 8e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03380 271 / 2e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 272 / 8e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27110 263 / 1e-78 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 305 / 3e-92 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 300 / 1e-89 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 294 / 4e-89 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 295 / 7e-89 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G156800 [exp] 292 / 4e-88 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 291 / 2e-87 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 289 / 2e-87 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 288 / 9e-87 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 290 / 2e-86 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039594 [exp] 723 / 0 AT4G18520 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029482 [exp] 722 / 0 AT4G18520 624 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 284 / 3e-85 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008967 [exp] 280 / 1e-83 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022469 [exp] 277 / 1e-83 AT3G50420 720 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 282 / 3e-83 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 277 / 4e-83 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 279 / 2e-82 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 277 / 9e-82 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032091 [exp] 272 / 4e-81 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G170300.2 pacid=42805194 polypeptide=Potri.005G170300.2.p locus=Potri.005G170300 ID=Potri.005G170300.2.v4.1 annot-version=v4.1 ATGCTCTCTTTAACGGCATGTGTTTTACCAAACACGTCTCTCCTCCAACAATCTTCTCCCTTCAACATACAACCGCCACCGTCCTTTACAGAACACAAAC GCGCTTCAAAAAAAGGAAACAATAATAATTACTCTAATTCTCATTGTTTCTCTTGCAAGAGCACTAGTGATTCACCTTCTGCTTCTTATTTTGAATACCC ATCAACCACAAATTCTCCCGGATATAAAGGAACCCCAGGTCTTCATTTTTCAAAAACAGAATCAGCAAGTGAATTTGTTGACTCTAGTTTGCTTGCACTT TGGCTGCAGTCTTGTTACAGGGTAAAAGACATTAGAAGAATACACGCGGTTTTCTTAAAGTGTTTGAGAGACTCGGGCACTTATGTCAATAATAATTTGT TGAGTGGGTATTTGAAATTAGGGGAGTTACTTGAGGCGCGAAAGGTGTTTGATGCAATGCCTGAACGAAATGTTGTTAGCTGGACGGCAATGATAAACGG GTACTTTAAGTTTGGTTTAGATGATGAAGCTTTAAGTTATTTTAGCCAGGCCATAAAGGATGGGGTTGTACCAAATAGCAAGACTTTTGTGTGTGTGTTA AATTTGTGTAGTAGAAGATTAGATTTTGAGTTAGGAAGACAAGTCCATGCTCGTGTTGTAAAGGGTAACTGGAGGAATTTGATCGTGGATAGTGCTGTTG TTTATTTCTATGTTCAATGTGGTGATTTGAAGAGCGCATTTTGTGTGTTTGATCGGATGGTCGAGCGGGACGTGGTTTCTTGGACAACAATGATTACTGC TTGCTCCCAACAAGGGCGCTGTGGAGAGGCTTTCGGGATGTTCACACAAATGTTGAATGGTGGGTTTTTGCCTAATGGGTTTACTGCATCTGGCATTTTG AAGGCATGTGGAGAGGAGAAGGCATTGAAGTTTGGGAAACAAATACATGGGGCTATAGTGAAGAAGATGTATAAAGATGATGTTTTTGTTGGGACTTCTT TGGTGGATATGTATGCTAAATGTGGAGAGGTTTCAGATTCTTCAAAAGTTTTCAATGGGATGAGGAGGAGGAACACGGTTACATGGACATCCATTATAGC AGGGTATGCTAGGAAGGGGCTTGGCGAGGAGGCTATATGTCTTTTTCGATTAATGATGAGACGACGGGTAGTTTCTAACAACTTGACCATTGTAAGTATG CTCAGGGCATGTGGCTTGATTGGGGCATTGCTTGCTGGGAGGGAAGTTCATGCACAAATCATTAAGAATTGCAGCCAATCAAATGAATACTTAGGAAGTA CTCTTGTGTGGTTCTACTGTAAATGTGGGGAGTCCCGTACTGCTTCAAAAGTCCTGCAACAAATGCCTTTCAGAGATGTTGTCTCATGGACTGCCATAAT TTCTGGTCATGCATGTCTTGGGCATGAGTCTGAGGCCCTTGAATTTTTGAAAGAAATGATGGAGGAAGGTGTGGAACCCAATTCATTTACTTATTCATCG GCTTTGAAAGCATGTGCCAATCTTGAAACTGTTCTGCAAGGGAAATTGATCCACTCCTCTGCCAATAAGACCCCTGCCTCATCTAATGTGTTTGTAGGTA GTGCTTTAATTCATATGTATGCCAGATGTGGGTATGTATCAGAGGCAATTCAAGTTTTTGACAGTATGCCAGAGCGGAATTTGGTTACTTGGAGGGCTAT GATTATGGGCTATGTAAGGAATGGGCTCTGCCAAGAGGCTTTGAAGCTCATGTATAGGATGCAGGCAGAAGGTATTCAGGTGGATGATTACATCTCTGCA AAAGTCCTTGGGGCATGTGGAGAAATAGAGTGGGATGCAGGGCATTCATCTGAGTACTGCTTGCGTACTAGTTGA
AA sequence Show only first row Show all	>Potri.005G170300.2 pacid=42805194 polypeptide=Potri.005G170300.2.p locus=Potri.005G170300 ID=Potri.005G170300.2.v4.1 annot-version=v4.1 MLSLTACVLPNTSLLQQSSPFNIQPPPSFTEHKRASKKGNNNNYSNSHCFSCKSTSDSPSASYFEYPSTTNSPGYKGTPGLHFSKTESASEFVDSSLLAL WLQSCYRVKDIRRIHAVFLKCLRDSGTYVNNNLLSGYLKLGELLEARKVFDAMPERNVVSWTAMINGYFKFGLDDEALSYFSQAIKDGVVPNSKTFVCVL NLCSRRLDFELGRQVHARVVKGNWRNLIVDSAVVYFYVQCGDLKSAFCVFDRMVERDVVSWTTMITACSQQGRCGEAFGMFTQMLNGGFLPNGFTASGIL KACGEEKALKFGKQIHGAIVKKMYKDDVFVGTSLVDMYAKCGEVSDSSKVFNGMRRRNTVTWTSIIAGYARKGLGEEAICLFRLMMRRRVVSNNLTIVSM LRACGLIGALLAGREVHAQIIKNCSQSNEYLGSTLVWFYCKCGESRTASKVLQQMPFRDVVSWTAIISGHACLGHESEALEFLKEMMEEGVEPNSFTYSS ALKACANLETVLQGKLIHSSANKTPASSNVFVGSALIHMYARCGYVSEAIQVFDSMPERNLVTWRAMIMGYVRNGLCQEALKLMYRMQAEGIQVDDYISA KVLGACGEIEWDAGHSSEYCLRTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18520			Pentatricopeptide repeat (PPR)...		Potri.005G170300 [exp]	0	1
AT5G39980			Tetratricopeptide repeat (TPR)...		Potri.017G075700 [exp]	1.00	0.9891
AT5G62990		EMB1692	embryo defective 1692, Ubiquit...		Potri.002G233900 [exp]	1.41	0.9872
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Potri.005G252300 [exp]	2.00	0.9769
AT3G22150			Tetratricopeptide repeat (TPR)...		Potri.006G007800 [exp]	2.23	0.9758
AT4G37380			Tetratricopeptide repeat (TPR)...		Potri.007G050200 [exp]	2.44	0.9850
AT1G59720		CRR28	CHLORORESPIRATORY REDUCTION28,...		Potri.018G092400 [exp]	4.47	0.9692
AT5G48470			unknown protein		Potri.002G251400 [exp]	5.19	0.9694
AT1G21600		PTAC6	plastid transcriptionally acti...		Potri.002G078900 [exp]	5.47	0.9630
AT1G36320			unknown protein		Potri.002G091000 [exp]	6.48	0.9736
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.010G168800 [exp]	6.92	0.9701

Compare expression of checked genes

Potri.005G170300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.