Plant FIBer expression Database

Potri.005G170400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G36320 469 / 1e-164 unknown protein
AT4G37920 286 / 8e-93 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G091000
[exp]
692 / 0 AT1G36320 481 / 3e-169 unknown protein
Potri.007G000400
[exp]
282 / 3e-91 AT4G37920 551 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033109
[exp]
501 / 1e-176 AT1G36320 437 / 1e-151 unknown protein
Lus10036666
[exp]
498 / 1e-175 AT1G36320 442 / 5e-154 unknown protein
Lus10029560
[exp]
280 / 2e-90 AT4G37920 515 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.005G170400.1 pacid=42802706 polypeptide=Potri.005G170400.1.p locus=Potri.005G170400 ID=Potri.005G170400.1.v4.1 annot-version=v4.1
ATGGAGCTGGCCTGTGCTTCTGTGCAGGCTTCTTGTTCTCTGACTGTACCGGCTTCTTCAATCACCTCGCGACGTCGGTCTCCTTCTCTCTCCTTCTTCA
GATATTCAATTTCAAACCCTATTATCTCTTCGAAACTCAATGGCTGTAGTTTACCAGTTAAGTCAGCGAGGCGGCGAAAATCCTCTCTTGTTGCTGCTGT
TGGGGGCACAACTACTGTACCGAGTGATTGTGAAGGAGAGAAGTTGTCGTTTTCTGGTTCGTCTGAACCAGCGGCTATTAATGATGACGAAAATGATGGT
GTTGATGATGGTAAAATGGCACGAGTATGCGATAAATTAATTGATGTTTTCATGGTCGACAAGCCCACTCCAAATGACTGGAGAAAGTTGCTCGCTTTTA
GCAAGGAATGGAACAATTTACGGCCTCATTTCTACAAGAGGTCTCAGGAACGAGCGGATAGCGAGGATGATCCTGGGAAGAAGCATAATCTACTCAAGTT
TGCTAGGAAATTTAAAGAGATTGATGAAGATATGCAAAGGCATAATGAACTTCTTGGAGTGATCAAGAAGGCACCATCGGAGTTAAGTGAAGTTGTTGCC
AAACATCGTAAAGACTTCACGAAAGAATTTTTTGCGCATCTTTACACTGTAGCACAATCATATCATGACAATCCAAGTGAGCAAAATGCCCTGGCAAAGC
TTGGAAATGACTGTGTGGCTGCTGTACAAGCTTATGATAGTGCAACAGAGAACACAGAAGCATTGAATGCTGCAGAAATAAAGCTCCAAGATATCATCAA
TTCTCCTTCCTTAGATGCTGCTTGCAAGAAGATAGATGATTTGGCTGAAAAAAATAAACTTGATTCAGCATTGGTACTGATGATCACAAAAGCATGGTCA
GCCGCTAAAGAGTCCAACATGACAAAAGATGAGGTCAAGGATGTACTGTATCACCTATACAAGACAGCAGTAGGTAATCTTCAGAGGAATGTGCCCAAGG
ACATTAGAATACTGAAGTATCTTCTCACAATTGAGGATCCTGAGGAGTGTTTGTGTGCCTTAAATGATGCATTTACTCAAGGAGAAGGACTAGAAGGGAA
GGATGTGGACTCTCTATGCACGACTCCAGAAAAGCTATACAGCTGGATAAAAGCTATGGTAGATGCTTACCATTTAAGTCAAGAAGGCACACTCATGAGG
GAGGCTAGAGATCTGATGAGTCCAAAGACCATAAAAAAGATGGAGGAACTGAAGAAGCTAGTGAAAGACCATTTCATGTGA
AA sequence
>Potri.005G170400.1 pacid=42802706 polypeptide=Potri.005G170400.1.p locus=Potri.005G170400 ID=Potri.005G170400.1.v4.1 annot-version=v4.1
MELACASVQASCSLTVPASSITSRRRSPSLSFFRYSISNPIISSKLNGCSLPVKSARRRKSSLVAAVGGTTTVPSDCEGEKLSFSGSSEPAAINDDENDG
VDDGKMARVCDKLIDVFMVDKPTPNDWRKLLAFSKEWNNLRPHFYKRSQERADSEDDPGKKHNLLKFARKFKEIDEDMQRHNELLGVIKKAPSELSEVVA
KHRKDFTKEFFAHLYTVAQSYHDNPSEQNALAKLGNDCVAAVQAYDSATENTEALNAAEIKLQDIINSPSLDAACKKIDDLAEKNKLDSALVLMITKAWS
AAKESNMTKDEVKDVLYHLYKTAVGNLQRNVPKDIRILKYLLTIEDPEECLCALNDAFTQGEGLEGKDVDSLCTTPEKLYSWIKAMVDAYHLSQEGTLMR
EARDLMSPKTIKKMEELKKLVKDHFM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G36320 unknown protein Potri.005G170400
[exp]
0 1
AT4G09730 RH39 RH39 (.1) Potri.005G198300
[exp]
2.23 0.9439
AT1G80770 PDE318 pigment defective 318, P-loop ... Potri.002G134900
[exp]
2.44 0.9393
AT2G16530 3-oxo-5-alpha-steroid 4-dehydr... Potri.004G163600
[exp]
2.64 0.9386
AT2G30320 Pseudouridine synthase family ... Potri.013G154200
[exp]
3.00 0.9382
AT5G12890 UDP-Glycosyltransferase superf... Potri.001G016300
[exp]
3.16 0.9379
AT5G55580 Mitochondrial transcription te... Potri.001G361800
[exp]
4.47 0.9472
AT5G18570 EMB3138, ATOBGL... EMBRYO DEFECTIVE 3138, EMBRYO ... Potri.010G022400
[exp]
5.83 0.9537
AT2G31170 FIONA, SYCOARAT... cysteinyl t-RNA synthetase, FI... Potri.018G024300
[exp]
6.48 0.9480
AT1G74850 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid... Potri.015G069100
[exp]
8.94 0.9534
AT3G13490 ATKRS-2, OVA5 OVULE ABORTION 5, ARABIDOPSIS ... Potri.003G221600
[exp]
10.00 0.9260

Potri.005G170400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.