Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TGA3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77920 468 / 5e-166 bZIP bZIP transcription factor family protein (.1) AT5G65210 452 / 1e-159 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT5G10030 451 / 2e-159 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT1G22070 446 / 5e-157 bZIP TGA3 TGA1A-related gene 3 (.1) AT5G06950 322 / 3e-109 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT3G12250 315 / 7e-107 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06960 316 / 8e-107 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT1G08320 313 / 2e-105 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT5G06839 308 / 2e-102 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT1G68640 295 / 1e-96 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G090700 [exp] 657 / 0 AT1G77920 444 / 1e-156 bZIP transcription factor family protein (.1) Potri.007G085700 [exp] 454 / 1e-160 AT5G65210 523 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.005G082000 [exp] 432 / 1e-151 AT5G65210 506 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.001G029800 [exp] 351 / 1e-118 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.003G194600 [exp] 349 / 1e-117 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.016G036500 [exp] 336 / 1e-112 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.006G039000 [exp] 334 / 5e-112 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.008G118300 [exp] 331 / 4e-111 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.006G058800 [exp] 328 / 4e-109 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042005 [exp] 514 / 0 AT1G77920 428 / 5e-150 bZIP transcription factor family protein (.1) Lus10018009 [exp] 510 / 0 AT1G77920 424 / 2e-148 bZIP transcription factor family protein (.1) Lus10009055 [exp] 506 / 0 AT1G77920 442 / 2e-155 bZIP transcription factor family protein (.1) Lus10031349 [exp] 496 / 7e-177 AT1G77920 429 / 1e-150 bZIP transcription factor family protein (.1) Lus10035873 [exp] 404 / 1e-140 AT5G65210 456 / 3e-161 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10037550 [exp] 388 / 2e-133 AT5G65210 444 / 3e-155 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10011445 [exp] 385 / 4e-133 AT5G65210 449 / 2e-158 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10025789 [exp] 350 / 7e-120 AT5G65210 402 / 4e-140 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10008658 [exp] 345 / 5e-118 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10026166 [exp] 345 / 7e-118 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor CL0018 [poplar] [flax] PF14144 [poplar] [flax] DOG1 Seed dormancy control
Representative CDS sequence Show only first row Show all	>Potri.005G170500.1 pacid=42802453 polypeptide=Potri.005G170500.1.p locus=Potri.005G170500 ID=Potri.005G170500.1.v4.1 annot-version=v4.1 ATGAGCTCTACGTCAACTCAAATTGCTGCCCTCAGAGGAATGGGCATTTATGAGCCCTTTAACCAGATTAGCTCATGGGCACACGCCTTCAGAGATGATG GTAGCCTAAACATTGGCCCATCCACAATTGTGCAGGTGGATGCTGGGCTAGACGACAAGAGTGAACATGTTTCACATGAATCAATGGAACCGTACAGAAG CGATCAAGAAGCACACAAACCTGCTGATAAGATACAAAGACGATTGGCACAAAATCGTGAAGCAGCTCGCAAAAGTCGCTTGCGGAAGAAGGCTTATGTT CAACAATTAGAATCCAGCCGAATGAAGTTGGCCCAGCTGGAGCAGGAACTTGAAAGAGCTAGGCACCAGGGTGCTTACTTAGGCAGTGCATCAAATTCTA GTCATTTAGGATTTTCAGGAACAGTAAATCCAGGAATTGCTGCATTTGAGATGGAATATGGACATTGGGTTGAAGAACAACATAAGCAAATCTCTGAACT TAGGAAAGCATTGCAAGCTCATATAACTGATATTGAGCTCCGAATACTTGTTGAGAATGGCTTGAACCACTATAACAATCTTTTCCGTATGAAAGCAGAT GCTGCGAAGGCTGATGTATTCTATCTGATATCTGGCAAATGGAGAACGTCAGTAGAACGCTTCTTTCAGTGGATCGGAGGATTCCGCCCATCAGAACTTC TAAATGTTCTCATGTCACAACTTGAGCCTTTGACTGATCAACAACTCGCTGATGTCTGTAACCTTCGTCAATCATCTCAGCAAGCTGAAGATGCTCTAAC TCAAGGAATTGATAAACTCCAGCAGACTCTGTCCCAAAGCATAGCAGTTGATGTAATGGGTGTTGGGGGTTATGGTCAGATGGCTGATGACATGGAGAAG TTAGAAGCTCTCGAGGGATTTGTGAACCAGGCCGATCACCTTCGGCAACAAACTCTGCAGCATATGTCTCGGATATTAACAATGCGCCAAGCAGCTCGTG GTTTACTTGCATTAGGAGAGTACTTTCACCGTCTTCGTGCTCTCAGTTCTCTATGGGCCGCTTGTCCTCGTGAACCCACTTAG
AA sequence Show only first row Show all	>Potri.005G170500.1 pacid=42802453 polypeptide=Potri.005G170500.1.p locus=Potri.005G170500 ID=Potri.005G170500.1.v4.1 annot-version=v4.1 MSSTSTQIAALRGMGIYEPFNQISSWAHAFRDDGSLNIGPSTIVQVDAGLDDKSEHVSHESMEPYRSDQEAHKPADKIQRRLAQNREAARKSRLRKKAYV QQLESSRMKLAQLEQELERARHQGAYLGSASNSSHLGFSGTVNPGIAAFEMEYGHWVEEQHKQISELRKALQAHITDIELRILVENGLNHYNNLFRMKAD AAKADVFYLISGKWRTSVERFFQWIGGFRPSELLNVLMSQLEPLTDQQLADVCNLRQSSQQAEDALTQGIDKLQQTLSQSIAVDVMGVGGYGQMADDMEK LEALEGFVNQADHLRQQTLQHMSRILTMRQAARGLLALGEYFHRLRALSSLWAACPREPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77920	bZIP		bZIP transcription factor fami...		Potri.005G170500 [exp]	0	1	Pt-TGA3.2
AT5G15080			Protein kinase superfamily pro...		Potri.017G077300 [exp]	3.87	0.8222
AT1G22540			Major facilitator superfamily ...		Potri.019G079551 [exp]	4.24	0.8189
AT1G78020			Protein of unknown function (D...		Potri.005G078600 [exp]	5.00	0.7925
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G015700 [exp]	6.48	0.8007
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Potri.001G460400 [exp]	8.77	0.7766
AT5G15080			Protein kinase superfamily pro...		Potri.004G123800 [exp]	9.89	0.7912
AT3G10250			Plant protein 1589 of unknown ...		Potri.016G038100 [exp]	11.22	0.7917
AT2G35550	BBR_BPC	BPC7, BBR/BPC7,...	basic pentacysteine 7 (.1.2.3....		Potri.001G133900 [exp]	12.00	0.7788
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Potri.009G074100 [exp]	12.00	0.7842	ZIP6.2
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412454 [exp]	14.00	0.7650

Compare expression of checked genes

Potri.005G170500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.