Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12350 363 / 4e-126 ATCOAB 4-phospho-panto-thenoylcysteine synthetase (.1) AT5G02080 321 / 3e-110 DNA / pantothenate metabolism flavoprotein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G090500 [exp] 578 / 0 AT1G12350 413 / 8e-146 4-phospho-panto-thenoylcysteine synthetase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029374 [exp] 417 / 4e-147 AT1G12350 399 / 2e-140 4-phospho-panto-thenoylcysteine synthetase (.1) Lus10016172 [exp] 411 / 6e-145 AT1G12350 398 / 6e-140 4-phospho-panto-thenoylcysteine synthetase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF04127 [poplar] [flax] DFP DNA / pantothenate metabolism flavoprotein
Representative CDS sequence Show only first row Show all	>Potri.005G170600.2 pacid=42803125 polypeptide=Potri.005G170600.2.p locus=Potri.005G170600 ID=Potri.005G170600.2.v4.1 annot-version=v4.1 ATGGATTCTAGAAATGGTTCAGTATCAGAAACTCCATTGGATGCTGAAATCGGATCATTTTTTGATTCAGCTCCTCCTCTAAAAGACTGTGATGGGATTG CCAAGAAATTGAAGGATTTCATTGAATTCAATTCTCCGCCACCAGGAAAAGGGAGTCCTACGGGGGTTGTGTGTGTGACATCTGGTGGCACCACAGTTCC GTTGGAGCAATGTTGCGTGCGTTACATTGATAATTTCAGTTCAGGCCATAGAGGAGCTACTTCTACTGAATATTTTATCAAGGCTGGATATGCTGTTATA TTTTTATATAGGAGGGGAACCTTCCAGCCATATTGCCGATCTCTTCCTGAGGATTCATTACTTGAATGTTTTGAGTGCTCTGATGACTCTGCTATTCAAG TGCGTCAACCATATGCTGAAGCAGTGAAGAGAGCCATTAGTGATCATCATGCTGCTGTAGCTGGAGGTCACCTGTTAAAAATTCCATTTACAACCATATT TGAGTATCTTCAGATATTACGAAGCATAGCAATGTCAATGAGGGATCTTGGATCACATGCTGTGTATTATCTTGCTGCTGCTGTGTCTGACTTTTATGTT CCATGGAAGAGCATGGCGGAGCACAAGATCCAGTCAGCATCTGGCCCTCTGGACATGCGACTGGTGCAGGTCCCAAAAATGCTCTCAGCGCTGAAGAAAG CATGGGCCCCCATGGCCTTCTGCATATCATTCAAGCTTGAGACAGATTCGAAGATTCTTTTGGAGAAAGCTGAAATGGCTCTTAAAAAGTACAGGATGCA TATGGTTGTTGCAAATGAACTTTCGACCCGCAAAGAGGAGGTAACAGTCGTCACTGGTAATGAAAAGATTCTTGTATGCCGCGACAAGACGCAGTCTGAT TCTGATGTGGAAGAACCGCTCATCGAACTAATTGTGGGCAGGCATTCAGCTTATGTTAAGGATTCTGATTTGTGA
AA sequence Show only first row Show all	>Potri.005G170600.2 pacid=42803125 polypeptide=Potri.005G170600.2.p locus=Potri.005G170600 ID=Potri.005G170600.2.v4.1 annot-version=v4.1 MDSRNGSVSETPLDAEIGSFFDSAPPLKDCDGIAKKLKDFIEFNSPPPGKGSPTGVVCVTSGGTTVPLEQCCVRYIDNFSSGHRGATSTEYFIKAGYAVI FLYRRGTFQPYCRSLPEDSLLECFECSDDSAIQVRQPYAEAVKRAISDHHAAVAGGHLLKIPFTTIFEYLQILRSIAMSMRDLGSHAVYYLAAAVSDFYV PWKSMAEHKIQSASGPLDMRLVQVPKMLSALKKAWAPMAFCISFKLETDSKILLEKAEMALKKYRMHMVVANELSTRKEEVTVVTGNEKILVCRDKTQSD SDVEEPLIELIVGRHSAYVKDSDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12350		ATCOAB	4-phospho-panto-thenoylcystein...		Potri.005G170600 [exp]	0	1
					Potri.012G031250 [exp]	3.46	0.8837
AT5G43250	CCAAT	NF-YC13	"nuclear factor Y, subunit C13...		Potri.001G055000 [exp]	7.34	0.8580
AT2G36985		DVL16, ROT4	ROTUNDIFOLIA4, DEVIL 16, DVL f...		Potri.006G125600 [exp]	7.74	0.8761	Pt-ROT4.1
					Potri.003G076700 [exp]	13.49	0.8286
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Potri.016G098600 [exp]	19.39	0.8262	XTH32.2
AT4G34215			Domain of unknown function (DU...		Potri.009G096400 [exp]	21.35	0.7903
AT2G44930			Plant protein of unknown funct...		Potri.017G019400 [exp]	29.32	0.7865
AT3G22510			Pre-rRNA-processing protein TS...		Potri.010G086800 [exp]	31.63	0.7283
AT5G62680			Major facilitator superfamily ...		Potri.001G376966 [exp]	32.40	0.7730
AT5G18290		SIP1B, SIP1;2	SMALL AND BASIC INTRINSIC PROT...		Potri.014G154400 [exp]	36.33	0.7832

Compare expression of checked genes

Potri.005G170600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.