Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22030 358 / 9e-124 unknown protein AT1G77855 335 / 6e-115 unknown protein AT1G01550 45 / 4e-05 BPS1 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G090300 [exp] 621 / 0 AT1G22030 360 / 2e-124 unknown protein Potri.001G211900 [exp] 372 / 1e-129 AT1G22030 291 / 2e-97 unknown protein Potri.003G018700 [exp] 358 / 1e-123 AT1G22030 266 / 2e-87 unknown protein Potri.019G084400 [exp] 50 / 7e-07 AT1G77855 47 / 5e-06 unknown protein Potri.013G113800 [exp] 46 / 2e-05 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019943 [exp] 263 / 3e-86 AT1G22030 241 / 9e-78 unknown protein Lus10015473 [exp] 111 / 3e-29 AT1G22030 100 / 2e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G170700.1 pacid=42805143 polypeptide=Potri.005G170700.1.p locus=Potri.005G170700 ID=Potri.005G170700.1.v4.1 annot-version=v4.1 ATGGATCCTTCCTCTGCGAATTCTCTCAATGGTTTCTACTCCTTTCTAACCAGAGGGATCGATGATCTTGAACGTGTCTATCTCTCTAACAACTTCATGT CGATTCAATTCCTTCAAAGGGTTCTCTCTTTATTAAGATCTTTTCACTCTCAGCTGACCTTGCTTGTCCAAAAACTCCATTTGCCTGTTGGGGATAAGTG GCTTGATGAATACATGGACGAGAGTTCTAAGCTATGGGAGGCATGCCATGTCCTTAAATCAGGCTTATCTGGGATCGAGAATTACTACTCTGCTGGATTC AATATCACTTCTTCTCTTGAAAACCATCGCCATCTTAGCCCCCAGCTATCTCGCCAGGTTACAAGGGCAATCTCCGGGTGTAGAAGAGAAGCAGTGGGAT TAGAAGAAGAGAATAGAGCTTTAATGGAAACAAGAATCCAACCACTGTCTTTGAGGTTTGATGAGAAGATTTCTATTGAATCCAAACTCAACGGATTCAA CGGTTTTCGTGGGGTTTTGTATGCAATGAGAAACGTAAGCTCTTTGCTACTGATGATCCTGCTCTATGGACTAGTGTATTGTTGGCCAGAATCAAGTTTT CTGCGAGGAGGGTATGAAGGGTGCTTGTTTTTCGGATCAGCTTTCTTGATCTCAACAGGGAGATTGCAGCAGAGAGTAGCGGCAGAGATAAACCAGATAA ATGGGAGGCCAGGGATTCTGCTCTATGAGTTCAGGAGATCAAAGATGGCCATGGAGGAGCTGAGAGGGGAGCTTGAGAGAAAGTGTGGACAAGGGGGAGC TGTAGAGTGGGAAACAGAGGTGGGGATAAGAGAAAGAGTGGACAACTTAAGAGGATGTTTTGGGGTGTTGAGATCTGGAGCTGAAAATATTGTTGGGCAA CTTGATGATTTCTTTGATGAGATCGTTGAAGGAAGGAAGAAGCTTTTGGACTTTTGCAGTCACAGGTAG
AA sequence Show only first row Show all	>Potri.005G170700.1 pacid=42805143 polypeptide=Potri.005G170700.1.p locus=Potri.005G170700 ID=Potri.005G170700.1.v4.1 annot-version=v4.1 MDPSSANSLNGFYSFLTRGIDDLERVYLSNNFMSIQFLQRVLSLLRSFHSQLTLLVQKLHLPVGDKWLDEYMDESSKLWEACHVLKSGLSGIENYYSAGF NITSSLENHRHLSPQLSRQVTRAISGCRREAVGLEEENRALMETRIQPLSLRFDEKISIESKLNGFNGFRGVLYAMRNVSSLLLMILLYGLVYCWPESSF LRGGYEGCLFFGSAFLISTGRLQQRVAAEINQINGRPGILLYEFRRSKMAMEELRGELERKCGQGGAVEWETEVGIRERVDNLRGCFGVLRSGAENIVGQ LDDFFDEIVEGRKKLLDFCSHR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22030			unknown protein		Potri.005G170700 [exp]	0	1
AT2G45590			Protein kinase superfamily pro...		Potri.014G072900 [exp]	15.87	0.7450
AT2G30933			Carbohydrate-binding X8 domain...		Potri.005G003500 [exp]	17.74	0.7350
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Potri.016G119800 [exp]	30.33	0.7179
AT3G54630			unknown protein		Potri.001G208700 [exp]	31.30	0.7115
AT1G06130		GLX2-4	glyoxalase 2-4 (.1.2)		Potri.017G026500 [exp]	40.39	0.6600	GLX2.3
AT1G70750			Protein of unknown function, D...		Potri.010G109900 [exp]	45.54	0.7023
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.007G022000 [exp]	51.98	0.6415
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Potri.003G126300 [exp]	72.66	0.6705
AT3G06130			Heavy metal transport/detoxifi...		Potri.013G025300 [exp]	83.06	0.6785
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Potri.018G097000 [exp]	91.88	0.6814

Compare expression of checked genes

Potri.005G170700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.