Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19770 536 / 0 ATVPS9A ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2) AT5G09320 469 / 1e-158 VPS9B Vacuolar sorting protein 9 (VPS9) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G066200 [exp] 325 / 6e-107 AT3G19770 338 / 4e-112 ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2) Potri.013G092250 [exp] 132 / 1e-35 AT3G19770 120 / 8e-32 ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2) Potri.013G092100 [exp] 46 / 8e-06 AT3G19770 65 / 6e-13 ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035376 [exp] 577 / 0 AT3G19770 572 / 0.0 ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2) Lus10030981 [exp] 519 / 0 AT3G19770 516 / 0.0 ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02204 [poplar] [flax] VPS9 Vacuolar sorting protein 9 (VPS9) domain
Representative CDS sequence Show only first row Show all	>Potri.005G171500.1 pacid=42803461 polypeptide=Potri.005G171500.1.p locus=Potri.005G171500 ID=Potri.005G171500.1.v4.1 annot-version=v4.1 ATGGAAAACTCGGACATATCGCTGGGATTGCACGACTTCCTAGAACGGATGCGCCATCCATCCGCCGCCGATTTTGTCAAATCCATTAAAAGCTTTATCG TCTCCTTTTCAAACCATGCTCCTGATCCGGAAAGGGACAGTGCTCTCGTGCAGGAGTTCCTTGCCAACATGGAAACGGCTTTCAAGGCTCATCCGCTTTG GGCTGGTTGCTCTGAGGAGGAGCTCGAGAGTGCTGGCGAAGGACTTGAGAAGTATGTTATGACAAAGTTATCTTCCCGTGTGTTTGCTTCAGTTCCAGAT GACGTGGAAGTTGATAAGCAACTTTCTGAGAAGATATCCTTGATTCAACAGTTCATTCGACCAGAAAATTTAGATATTAAGCCTGCCTTTCAAAATGAAA CATCATGGCTGCTTGCCCAAAAAGAGCTGCAGAAGGTCAACTTATACAGAGCACCAAGAGACAAGCTTGTGTGTATCCTCAATTGTTGCAAAGTCATAAA TAATTTACTGTTCAATGCCTCAATGGCTTCAAATGAGAATCCTCCTGGAGCTGACGAATTTCTTCCTGTTTTGATTTATGTTACTATAAAGGCAAATCCC CCACAACTGCACTCGAATTTGTTGTATATTCAACGGTACAGGTGTCAATCTCGACTAGTTGGAGAAGCAGCCTATTTTCTTACGAACATTCTCTCTGCAG AGTCTTTCATCTCAAACATTGATGCAAAATCACTTTCAATGGAGGAATCTGAATTTGAAAAAAACATGGAACTTGCTCGAGACCTTACTGGCCTTTCAAC TGATTTGAATGGTCTGTCTACTCAAAGTGATCAAAATGCAGGAAACAATTCCAGAGCAGAACTTATGGAATCCAAACATCGAGCTTTGAGCTCTAAGAAG GAAAGGGACTTGTCAATTGGATCCAGATCTTCTGAAGTGACATCTATGAGTAAGGATCTGCAATATGCCAAAGATGAGTCGCCAATGGAAAAGATTTCAT CACTCTCAGATATAGAGAATAAAGGAGCAACTTTGCTTTTGAAGGAGGATCTGACAAGTCAGGTCCTTAGAGAATACCCGTACTTGTTTGCCAGTGTTGG TGATCTAACAATCAATGATGTAGAAGACCTACTAAATAATTACAAACAACTTGTCTTCAAGTATGTTTGTCTTTCTAAAGGGCTGGGTGTTGCTAATCCA TCTCTTCCTTTGACTAGTTCTCAGACGCAAGTTCATGGTGATGTCAAAACTGTGAACTATGACCAAAATACCACAGCAGTAGAGGCAAATAAAGAGTCCC GTAAACATACTGGTATGACAGATGGTTTAAATATGGTTTCCCTTGTTGACGAAGAGAATGTTGAATTGAAGCCCAGGAACAATCAAGATAGCACAGCAGG AGAGCCAAATGACGAGTCACAGACACATACTAGTATGACAGATGGTTCAAATATGCTTTCCCTTGTTGGTGAAGAGATTCTTGTATCAAAGCCTAAGCAG AACGAGGCAATGGTGCCTCAGTATGAGGGAAAGGATGAGAATCTCAATGATAGCCATTGGGACATGCCTCGAGATGAGGAAAAGCATGAGAGTTCTTAA
AA sequence Show only first row Show all	>Potri.005G171500.1 pacid=42803461 polypeptide=Potri.005G171500.1.p locus=Potri.005G171500 ID=Potri.005G171500.1.v4.1 annot-version=v4.1 MENSDISLGLHDFLERMRHPSAADFVKSIKSFIVSFSNHAPDPERDSALVQEFLANMETAFKAHPLWAGCSEEELESAGEGLEKYVMTKLSSRVFASVPD DVEVDKQLSEKISLIQQFIRPENLDIKPAFQNETSWLLAQKELQKVNLYRAPRDKLVCILNCCKVINNLLFNASMASNENPPGADEFLPVLIYVTIKANP PQLHSNLLYIQRYRCQSRLVGEAAYFLTNILSAESFISNIDAKSLSMEESEFEKNMELARDLTGLSTDLNGLSTQSDQNAGNNSRAELMESKHRALSSKK ERDLSIGSRSSEVTSMSKDLQYAKDESPMEKISSLSDIENKGATLLLKEDLTSQVLREYPYLFASVGDLTINDVEDLLNNYKQLVFKYVCLSKGLGVANP SLPLTSSQTQVHGDVKTVNYDQNTTAVEANKESRKHTGMTDGLNMVSLVDEENVELKPRNNQDSTAGEPNDESQTHTSMTDGSNMLSLVGEEILVSKPKQ NEAMVPQYEGKDENLNDSHWDMPRDEEKHESS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Potri.005G171500 [exp]	0	1
					Potri.013G144251 [exp]	9.79	0.6383
AT3G17380			TRAF-like family protein (.1)		Potri.017G049200 [exp]	33.10	0.6907
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Potri.001G285100 [exp]	41.42	0.6217
AT1G22920		CSN5A, JAB1, AJ...	ARABIDOPSIS JAB1 HOMOLOG 1, CO...		Potri.018G006100 [exp]	68.17	0.6115	AJH1.3
AT5G26160			unknown protein		Potri.006G224200 [exp]	70.28	0.6454
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Potri.005G074900 [exp]	101.43	0.6268	Pt-UBP3.2
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Potri.017G027000 [exp]	111.64	0.6018
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.001G314200 [exp]	116.91	0.5817	Pt-B5.3
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Potri.010G254400 [exp]	197.00	0.5643
AT5G07960			unknown protein		Potri.012G065500 [exp]	226.56	0.5710

Compare expression of checked genes

Potri.005G171500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.