Plant FIBer expression Database

Potri.005G171700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64610 751 / 0 HAM1 histone acetyltransferase of the MYST family 1 (.1)
AT5G09740 743 / 0 C2H2ZnF HAM2 histone acetyltransferase of the MYST family 2 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G089500
[exp]
850 / 0 AT5G64610 748 / 0.0 histone acetyltransferase of the MYST family 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001302
[exp]
774 / 0 AT5G64610 775 / 0.0 histone acetyltransferase of the MYST family 1 (.1)
Lus10012707
[exp]
773 / 0 AT5G64610 779 / 0.0 histone acetyltransferase of the MYST family 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0257 Acetyltrans PF01853 MOZ_SAS MOZ/SAS family
CL0049 Tudor PF11717 Tudor-knot RNA binding activity-knot of a chromodomain
Representative CDS sequence
>Potri.005G171700.2 pacid=42804474 polypeptide=Potri.005G171700.2.p locus=Potri.005G171700 ID=Potri.005G171700.2.v4.1 annot-version=v4.1
ATGGGTTCGATTGACACCCCCAAAAATCCAGAGAACGGCTCCACAACTCTGCCTCCCACCACCGACGCTTCCGCTACCTACGACGGCGATCAAAACCCTA
CTAACGGAATGCCTCCACGTGTCACCGAAATGACGCTTCCGGTCGAATCCGAAGTGGTTAAGAAGAGGAAAACGAGTATGTTACCGCTCGAGGTAGGCAC
TCGCGTTTTGTGCCGTTGGAGAGACTGCAAATACCATCCGGTTAAGGTCATCGAGCGCCGTAAGATGCAGTCTGGTGGGACCAACGATTACGAGTATTAC
GTGCATTATACAGAGTTCAATAGGAGGCTTGATGAGTGGGTGAAACTTGAACAACTAGATCTTGATTCAGTAGAGACTGTTGTTGATGAAAAGGTGGAGG
ACAAGGTAACAAGCTTGAAAATGACACGCCACCAGAAACGGAAGATTGACGAGACACATGTGGAGGGCCATGAGGAGCTTGATGCTGCCAGCTTACGTGA
GCATGAGGAATTCACAAAAGTAAAAAATATAGCCACGATTGAGCTTGGAAGATATGAGATTGAGACATGGTACTTCTCGCCTTTCCCACCAGAATACAAT
GATTGTCTGCAGCTGTACTTTTGTGAATTTTGCCTCAATTTCATGAAGCGTAAAGAGCAGCTCCAAAGGCATATGAAGAAGTGTGATCTCAAGCACCCGC
CTGGTGATGAAATTTATCGAAGTGGCACGTTATCAATGTTTGAGATAGATGGCAAAAAGAACAAGGTTTATGGGCAGAATCTTTGTTATTTGGCGAAGTT
GTTTCTTGATCACAAGACCCTTTATTATGATGTTGACCTATTTCTATTTTACGTTTTGTGCGAATGTGACGATCGAGGATGCCACATGGTTGGATATTTT
TCCAAGGAAAAGCATTCTGAGGAATCCTATAATTTGGCATGTATCCTCACCCTTCCTCCTTATCAAAGGAAAGGCTATGGAAAGTTCTTAATTGCCTTCT
CATATGAACTTTCCAAGAAAGAAGGTAAAGTTGGCACACCTGAAAGACCCCTTTCTGACCTGGGGTTGTTGAGCTACAGAGGATATTGGACCCGAGTTCT
TTTAGACATCTTGAAAAGGCACAAGGGCAATATTTCTATCAAGGAGCTTAGTGACATGACAGCAATAAAGGCAGAGGATATTTTGACTACCCTTCAGAGC
CTAGAACTGATTCAGTACAGGAAAGGGCAGCATGTGATATGTGCGGATCCGAAGGTCCTGGATCGTCATCTAAAAGCTGCTGGTCGGGGTGGTCTTGAGG
TTGATGTTAGCAAATTGATCTGGACTCCTTACAAAGAACAAGGTTGA
AA sequence
>Potri.005G171700.2 pacid=42804474 polypeptide=Potri.005G171700.2.p locus=Potri.005G171700 ID=Potri.005G171700.2.v4.1 annot-version=v4.1
MGSIDTPKNPENGSTTLPPTTDASATYDGDQNPTNGMPPRVTEMTLPVESEVVKKRKTSMLPLEVGTRVLCRWRDCKYHPVKVIERRKMQSGGTNDYEYY
VHYTEFNRRLDEWVKLEQLDLDSVETVVDEKVEDKVTSLKMTRHQKRKIDETHVEGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPPEYN
DCLQLYFCEFCLNFMKRKEQLQRHMKKCDLKHPPGDEIYRSGTLSMFEIDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYF
SKEKHSEESYNLACILTLPPYQRKGYGKFLIAFSYELSKKEGKVGTPERPLSDLGLLSYRGYWTRVLLDILKRHKGNISIKELSDMTAIKAEDILTTLQS
LELIQYRKGQHVICADPKVLDRHLKAAGRGGLEVDVSKLIWTPYKEQG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G64610 HAM1 histone acetyltransferase of t... Potri.005G171700
[exp]
0 1
AT1G64720 CP5 Polyketide cyclase/dehydrase a... Potri.012G021400
[exp]
1.00 0.8643
AT5G61500 ATATG3 autophagy 3 (APG3) (.1) Potri.001G126500
[exp]
4.58 0.8606
AT1G29800 RING/FYVE/PHD-type zinc finger... Potri.011G106700
[exp]
4.69 0.8637
AT4G26620 Sucrase/ferredoxin-like family... Potri.001G369300
[exp]
12.48 0.8050
AT4G12240 C2H2ZnF zinc finger (C2H2 type) family... Potri.003G114700
[exp]
13.03 0.8411
Potri.013G087300
[exp]
14.42 0.8353
AT2G31130 unknown protein Potri.013G118000
[exp]
14.69 0.8420
AT4G38090 Ribosomal protein S5 domain 2-... Potri.007G010400
[exp]
16.91 0.8300
AT1G64720 CP5 Polyketide cyclase/dehydrase a... Potri.015G005000
[exp]
16.94 0.8140
AT5G49220 Protein of unknown function (D... Potri.008G213300
[exp]
17.43 0.8314

Potri.005G171700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.