Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77800 521 / 4e-160 PHD finger family protein (.1.2) AT2G31650 120 / 3e-27 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT1G05830 115 / 1e-25 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT4G27910 105 / 2e-22 SDG16, ATX4 SET domain protein 16 (.1) AT5G53430 104 / 3e-22 SET29, ATX5, SDG29 SET domain group 29 (.1) AT3G61740 99 / 2e-20 SDG14, ATX3 SET domain protein 14 (.1.2) AT3G14740 85 / 3e-17 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT4G21070 53 / 2e-06 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) AT1G04020 49 / 4e-05 ROW1, ATBARD1, BARD1 breast cancer associated RING 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G089400 [exp] 2357 / 0 AT1G77800 939 / 0.0 PHD finger family protein (.1.2) Potri.002G232800 [exp] 120 / 5e-27 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.014G146300 [exp] 116 / 7e-26 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.012G013900 [exp] 103 / 7e-22 AT5G53430 1423 / 0.0 SET domain group 29 (.1) Potri.015G014300 [exp] 100 / 4e-21 AT5G53430 1322 / 0.0 SET domain group 29 (.1) Potri.002G170600 [exp] 97 / 6e-20 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2) Potri.011G103100 [exp] 90 / 1e-18 AT3G14740 339 / 1e-115 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.014G098400 [exp] 92 / 2e-18 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.001G382500 [exp] 89 / 3e-18 AT3G14740 338 / 3e-115 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009785 [exp] 779 / 0 AT1G77800 388 / 3e-115 PHD finger family protein (.1.2) Lus10024778 [exp] 646 / 0 AT1G77800 533 / 6e-174 PHD finger family protein (.1.2) Lus10024777 [exp] 530 / 9e-173 AT1G77800 385 / 7e-120 PHD finger family protein (.1.2) Lus10009786 [exp] 175 / 2e-49 AT1G77800 155 / 2e-43 PHD finger family protein (.1.2) Lus10026725 [exp] 112 / 2e-24 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025508 [exp] 112 / 2e-24 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10038142 [exp] 94 / 3e-20 AT3G14740 315 / 1e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10024779 [exp] 81 / 8e-18 ND 72 / 7e-16 Lus10012626 [exp] 79 / 2e-14 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10019026 [exp] 74 / 9e-13 AT4G27910 1171 / 0.0 SET domain protein 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF13831 [poplar] [flax] PHD_2 PHD-finger CL0390 [poplar] [flax] zf-FYVE-PHD PF13832 [poplar] [flax] zf-HC5HC2H_2 PHD-zinc-finger like domain
Representative CDS sequence Show only first row Show all	>Potri.005G171800.1 pacid=42802426 polypeptide=Potri.005G171800.1.p locus=Potri.005G171800 ID=Potri.005G171800.1.v4.1 annot-version=v4.1 ATGACCGGAGGCCGATGCCACCGGCGAAAGAAGATGATGGGTAGGGGTCCTGACGGAGGTTGCGGCACTGGCGAGAGGTCTTGCCGTCCAATTTCTAGGG TTCCGGCATCCAATTCCCTCATGAAGGAGTCTGAAATACCTCAACCAAAAGTAAAGAAATCGAATCCACTCGAGGTTGATTTCTTCTCCCAAGCTCACAA GGTCTTAAGCGTGCGCTCGCCATTTGATGCTGCAGAGAATGCGTCTGGTTCTGGTGTTTCGAGTTTTCCAAGTGCGTCTACTTTGCCAAGCAGGTTGGCT AGTTTGTTGAGGCAATCAAATGGGAGCAGAAAGAGACATAAAAGGTCTCATTCTGGAGCGGATAAGAAGTCTTCTTCGAGGCCAAGTGACGGGTCTAAAA GAGGGAATATTTGGGTTGAGACTGAAGATTACTTTAGGGAATTGACATTGCCTGATATTGATGATTTGTTTGAGTTATCTTCTTTATTTAATTCTTTAGG TTATAGTAAGTGTTTTTACATTCCATATATTGGAAATGAGAAAACTGAGAGAATCGAGACCATTGTGACAAATGTGAAAACTGGGGAAAATGTGAATGGG AAGTTTGAAGAAAGCGAGACTAATGAACAAACCGACACAAGGGCCAATGTGGAGAATGCAAATGGTAACTTTGAAATGGATTGTATGGGTGGAAATGGAA ATGGACTCGTCTTGAAAGACGAAGTCAATCAAGAGGATGAGCAGTTAATGGAAATCGACGTTGTGACTCAAAGTGATGGAGCTGTGTGTTTGCCCCAGGA GAAAGCAAAGACGTGCTCTGTTTCTGATTTGTCTAGCAGTGTAGAGTGGCTTTTAGGTTGTAGAAATAGGGATATATTGACCTCTGAAAAGCCTTCCAAG AAGCGGAAACTTTTAGGCAGTGATGCAGGGTTGGAGAAGGTTTTGGTTGGTTGTCCTTGTGAAGGAAACTTGCCATTATGTGATTTTTGCTGCAAGAGCG AGATGGGTAATGATTCAAACCGGTTGATTATTTGCTCTTCTTGCAAGGTTGCTGTTCATCCTAAGTGTTACGGTGTGCAAGGAGATGTAAGCGAGTCGTG GTTGTGTTCCTGGTGCAAGCAGAAGAGTGATGGCAATGATTTAGCGAAGCAGTCTTGTGTACTTTGTCCGAAGCAGGGTGGTGCTTTGAAACCTGTTGAT GTAGACAATGGTAAGTCTGTTCTGGATTTTGTGCACTTGTTTTGTTCCCAGTGGATGCCTGAGGTCTATATAGAGGATTTAGCAAAGATGGAGCCAATTA TGAATGTGAGTGGAATTAAGGAAACCCGAAGAAAATTAGTGTGTAATGTATGCAAGGTGAAGTGTGGTACCTGTGTTCGGTGCAGTCATGGAACTTGTAG AACTGCTTTCCATCCTATATGTGCAAGGGAAGCAAGACATAGGATGGAGGTCTGGGGGAAATATGGTACTGATAATGTTGAATTACGAGCCTTTTGCTCA AAGCACACTGAACTCCCTAATGATAGGGATACCCATCAATTAGGAGAGGCTTTTGTGCCTGCCAGCCATGACTGCTCTGTTGCCAGCCATAATCCATCAA CGTTGCAAATGGACAAACAGCGTAAGTTAAATATTGGCCAAAATGGAGACAAACTTGCAGTCCACACAGAAACTTCTGATACTAATTCTGGTAAACCTGG TGATGGTGAGTTATGGGAAATAGGATTGTTTGATTCCAGATCAAATGCTGAACCTTTGTCAGAATCTGGGGACGTGGACAAACTCATTGATATAGGGATA TTTGAGAGAGGTGGCTATGAGGGTGCTAGCACTGACTCCCGAAATCTTTTGCTGATTTTGAAGAAGTTAATTGACCAAGGAAAAGTCAATGCTGAAGAGT TGGCAATGGAAATTGGCATGTCACCTGATTTGATAAATTCAACATTGGCTGAAGTTAATTTGGTCCCTGATTTTCAGTCCAAATTAGTCAAGTGGTTTCA GAATCATGTTTATGTGGCCAGTCAACGTAAATATTTGAAAGTTAAACTAAAATCCATGATTTTACCAAAGGCTGAGATTGTAACAGCAGACCATTCTGAT GGTATAACTATATCTGAGACTGATATTACAGATGCTGTTGCTGTTAAATCAGTTCCCCCTCGGAGAAGAACCAAAAGTAACTTTAGAGTTTTGAGGGATA ACGGAGTAATTTGCTCACAAGAGGAAATTTTTAGTGACAACAGTATGCTAATGGAAGATATGAAAGTTGTCAGTCAGCTGAGAGGTGAAGAACCTGAAAA ATCTAGTGAAGCATCCTTCCCTGATGTATCTGAAAAGATCGCTGATGCGTTTCAAGACTCTTCAGTGGTGCATTTGCCTAAAAGTGAAGGCAGTTCAGAT AATGTCTCAGGTGGAAGCCTTTCTGAAAAAATCAAGCCAGTTCATGCAGCTATTCCAGAGAAGAGCAATTCAATTAACACAGATGGGGGAGTTCCTCTTT ATTCAGATGTTAATTTAGTCATCCCTAATTTCATAAAACCAGAAGAATATTCTAATTTTTATGTCCATTCATGTGTCCATGAGAAGCTGTCACAGATACA AATTGGAATGCTTTTACAGAAAGGAATTTCTGAACTTGAAGGTTCAAAAGACAGAGAAATCTCTCATTTGGAGGCCTCTTGCAATCCCAGTGTCTTCTGT AATCATCAGAATAAACACTCAAAATGCAATGACTTGATCTGTAATTCAAGTGAAGTAAATTTAGAGCAGTTGGCTAAGGCTAAGAAACTGGGAATTCTCA AACTGTCTCCAGTGGATGAAGTGGAAGGAGAAATTATTTATTTTCAGAAGAGGCTACTTGGCAATGCAGTTGCAAGGAAGCACTTCACTGATAATTTAAT ATCTAAGGTTGCCAGGCATCTACCCCAGGAGATGGATGCAGCTAGGGGGAAAAGTTGGGATGAAGTGCTTGTTAGCCAATATCTTTGTGATGTTAGAGAA GCAAAGAAGCGGGGCAGGAAAGAAAGAAGGCACAAGGAAGCCCAGGCTGTTCTAGCTGCTGCAACTGCAGCAGCAGCAGCTTCTTCTCGGTCTTCATCAT TTAGGAAAGATGCCTTTGATGAATCTGCTTGTCAGGAGAAATATAACACTGCTAGTGTGAGGGCTGGCATTTCTTCTCTGTTGACGCGACGTCCAAAAGA AATGCTTTCAAGGGTGGCTATTCCAAGGATTTCATTAGAGAAGTACTCTGATTTTGTTCAGTCAGTTTCAGGTTTTTCTAAAGATCATCCTAGATCATGT GACATATGCAGACGATTTGAGACAATACTGAACCACATCCTAGTCTGCTCTGGCTGCAAGGTTGAGGTTCACTTGGATTGCTATCGTTGTGGGAAGGAAT CTAATGGTCCATGGCATTGTGAATTATGTGAAGAATTATTGTCATCTAGATGCTCTGGAGCTCCTGTCAATTTCTGGGACAGGGCAAATAGTGCGGAATG TGGTTTATGTGGTGGTATTACTGGTGCTTTCAGGAAATCTACTGATGGTAGATGGGTTCATGCCTTTTGTGCAGAGTGGGTCTTTGAACCAACATTCAGA AGGGGACAAGTAAATCCTGTTGAAGGAATGGAAACGATTGCAAAGGAGATTAACATTTGTTGTGTCTGCCGTCATAGACATGGTGTCTGCATAAAATGTA ACGCTGGTCACTGTCAGACCACATTTCATCCAACTTGCGCTAGAAGTGCGGGTTTTTACATGAATGTTAAGACTCTTAATGGCAAGATGCAGCACATGGC ATATTGTGAAAAGCATAGCTTGGAGCAGAAGGCAAAGACTGGAACTCAAAAACATGGAGAAGAGGAGATAAAGAGCATGAGGCAAGTCAGGGGTCAACTG GAGAGATTGCGTCTTCTTTGTGAAAGAATTGTTAGACGTGAAAAAATAAAGCGGGAGTTGGTTTTATGCTCACACAGCATACTTGCTTGCAAACGAGACC AAGTTGCTCGATCGGTGCTTGTTAGCAGTCCCTTTTTCCCTACAGATGTTAGTTCAGAATCAGCTACAACATCCCTCAAAGGGAATACAGATGGGTACAA GTCATTTGGTGATGCTGTCCAAAGGTCAGATGATGTCACAGTAGACAGCACCATTTCTGTCAAGCACAGAATTAAGGTGACTTTGACCATGGACACTGAC CAAAAGACAGATGACAGCTCCACATCTCAAAGTCATTTTACTCCAAAACCTTCAGAGAGGATGCCTTTTGCTGGGAAGCAAATACCTCAAAGACCTTCTT CTGCATCTTATAGTATTTTGGAAGAGGGAGAATGGAGCTCAAAATCAAAGCATTATGAGACTTTTGAGAAAGAGTTGGTAATGACTTCAGATGAAGCATC GATGAAGAACCAGAAATTACCTAAAGGATATTTCTATATTCCTGTTGATTGCCTTCCAAAGGAGAAGCAGATCAATCAGGATGCTTGTTCTGGTGAACCC TTGGAACATGATAGGTAG
AA sequence Show only first row Show all	>Potri.005G171800.1 pacid=42802426 polypeptide=Potri.005G171800.1.p locus=Potri.005G171800 ID=Potri.005G171800.1.v4.1 annot-version=v4.1 MTGGRCHRRKKMMGRGPDGGCGTGERSCRPISRVPASNSLMKESEIPQPKVKKSNPLEVDFFSQAHKVLSVRSPFDAAENASGSGVSSFPSASTLPSRLA SLLRQSNGSRKRHKRSHSGADKKSSSRPSDGSKRGNIWVETEDYFRELTLPDIDDLFELSSLFNSLGYSKCFYIPYIGNEKTERIETIVTNVKTGENVNG KFEESETNEQTDTRANVENANGNFEMDCMGGNGNGLVLKDEVNQEDEQLMEIDVVTQSDGAVCLPQEKAKTCSVSDLSSSVEWLLGCRNRDILTSEKPSK KRKLLGSDAGLEKVLVGCPCEGNLPLCDFCCKSEMGNDSNRLIICSSCKVAVHPKCYGVQGDVSESWLCSWCKQKSDGNDLAKQSCVLCPKQGGALKPVD VDNGKSVLDFVHLFCSQWMPEVYIEDLAKMEPIMNVSGIKETRRKLVCNVCKVKCGTCVRCSHGTCRTAFHPICAREARHRMEVWGKYGTDNVELRAFCS KHTELPNDRDTHQLGEAFVPASHDCSVASHNPSTLQMDKQRKLNIGQNGDKLAVHTETSDTNSGKPGDGELWEIGLFDSRSNAEPLSESGDVDKLIDIGI FERGGYEGASTDSRNLLLILKKLIDQGKVNAEELAMEIGMSPDLINSTLAEVNLVPDFQSKLVKWFQNHVYVASQRKYLKVKLKSMILPKAEIVTADHSD GITISETDITDAVAVKSVPPRRRTKSNFRVLRDNGVICSQEEIFSDNSMLMEDMKVVSQLRGEEPEKSSEASFPDVSEKIADAFQDSSVVHLPKSEGSSD NVSGGSLSEKIKPVHAAIPEKSNSINTDGGVPLYSDVNLVIPNFIKPEEYSNFYVHSCVHEKLSQIQIGMLLQKGISELEGSKDREISHLEASCNPSVFC NHQNKHSKCNDLICNSSEVNLEQLAKAKKLGILKLSPVDEVEGEIIYFQKRLLGNAVARKHFTDNLISKVARHLPQEMDAARGKSWDEVLVSQYLCDVRE AKKRGRKERRHKEAQAVLAAATAAAAASSRSSSFRKDAFDESACQEKYNTASVRAGISSLLTRRPKEMLSRVAIPRISLEKYSDFVQSVSGFSKDHPRSC DICRRFETILNHILVCSGCKVEVHLDCYRCGKESNGPWHCELCEELLSSRCSGAPVNFWDRANSAECGLCGGITGAFRKSTDGRWVHAFCAEWVFEPTFR RGQVNPVEGMETIAKEINICCVCRHRHGVCIKCNAGHCQTTFHPTCARSAGFYMNVKTLNGKMQHMAYCEKHSLEQKAKTGTQKHGEEEIKSMRQVRGQL ERLRLLCERIVRREKIKRELVLCSHSILACKRDQVARSVLVSSPFFPTDVSSESATTSLKGNTDGYKSFGDAVQRSDDVTVDSTISVKHRIKVTLTMDTD QKTDDSSTSQSHFTPKPSERMPFAGKQIPQRPSSASYSILEEGEWSSKSKHYETFEKELVMTSDEASMKNQKLPKGYFYIPVDCLPKEKQINQDACSGEP LEHDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77800			PHD finger family protein (.1....		Potri.005G171800 [exp]	0	1
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Potri.002G181400 [exp]	1.00	0.8873	SIN1.1,DCL902
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Potri.008G035200 [exp]	1.73	0.8758
AT3G17450			hAT dimerisation domain-contai...		Potri.002G188400 [exp]	2.23	0.8702
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Potri.008G048000 [exp]	2.44	0.8662
AT5G67570		EMB246, DG1, EM...	EMBRYO DEFECTIVE 246, embryo d...		Potri.007G004900 [exp]	2.82	0.8636
AT1G65440		GTB1	global transcription factor gr...		Potri.016G029200 [exp]	3.16	0.8805
AT1G70620			cyclin-related (.1.2.3)		Potri.010G046000 [exp]	3.46	0.8738
AT5G04460			RING/U-box superfamily protein...		Potri.008G030100 [exp]	3.87	0.8331
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Potri.012G058100 [exp]	6.00	0.8407
AT3G08820			Pentatricopeptide repeat (PPR)...		Potri.016G128900 [exp]	7.21	0.8351

Compare expression of checked genes

Potri.005G171800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.