Plant FIBer expression Database

Potri.005G172100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G36990 250 / 4e-75 unknown protein
AT4G08510 211 / 9e-61 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G089100
[exp]
645 / 0 AT1G36990 281 / 5e-87 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028037
[exp]
380 / 9e-125 AT1G36990 370 / 3e-121 unknown protein
Lus10003744
[exp]
348 / 9e-113 AT1G36990 361 / 9e-118 unknown protein
Lus10029655
[exp]
343 / 4e-111 AT1G36990 364 / 9e-120 unknown protein
Lus10042697
[exp]
336 / 2e-108 AT1G36990 352 / 4e-115 unknown protein
PFAM info
Representative CDS sequence
>Potri.005G172100.3 pacid=42802472 polypeptide=Potri.005G172100.3.p locus=Potri.005G172100 ID=Potri.005G172100.3.v4.1 annot-version=v4.1
ATGGAAAAAAGTGAACCCTCTTTAGTACCAGAATGGCTGAAAAGTACAGGCACTGTCTCTGGGGCTGGCAGTTTAGCCCACCACTTCGCATCATCTTCTT
CTCACTCAGATGTCCCTTCATTGGCAAATCACACGAGAAATAGGAGCTCTAAGAGCATAAATGATTTTGATTCCCCTCGCCCTGGTTTTCTGGACCGGAC
ATCTTCATCTAATTCACGAAGAAGTTCTGGCAATGGATCTGCAAAGCATCCTTACAGTAGTTTTAGTAGAAGTCACCGCGATAAAGATCGAGAAAGGGAC
AAAGAGAGGTCTAGCTTTATGGATAATTGGGACAGGGACTCTTCTGATCCCTTGGGAGGCTTATTAACCAACAGGATTCAGAAGGATACCTTGCGACGTT
CCAGTTCATTGGTATCGAGGAAACATGTTGAGCTGATGCCTCGCAGAGCTGCATCAGACTTAAAAAATGGGAGTGGCAACACTCACACCAACGGCAATGG
TTTGATTTCCGGGGGTAGTTTTGGTAGTAGCAGTCAGAAGGCAGTGTTTGAAAAGGATTTTCCTTCACTTGGAAGTGAAGATAGGCAAGGAGTGCCTGAT
ATAGCAAGAGTTTCATCTCCTGGTTTAAGCTCGAGTGTTCAGAGCTTGCCTGTTGGCAGTTCTGCTTTGATCGGTGGGGAGGGATGGACATCAGCTCTGG
CAGAGGTGCCGGCTATTATTGCAAACAGCAGTACAAGTTCTTCATCTGCTGCACAGACTGTTGTTGCTTCTTCATCCGGGACTTCAAGTGGAATGGCTGG
TCTCAATATGGCTGAAACATTGACTCAGGCTCCATCAAGAACTCGAACTGCACCACAGCTGTCTGTCCAGACACAAAGGCTTGAGGAGTTGGCTATTAAG
CAATCAAGGCAGTTAATACCTGTGACTCCCTCGATGCCTAAGAATTTGGTTCCCAGTTCTTCTGATAAATCAAAGCCTAAAACAGGAATCAGACCTGCTG
AGATGAATACGGCTGCCAAGAGCTTACACCAGCAGTCTTCTTCATTGCACCTTGCTAATCAATCTTCTGTAGGGGTAAATGTCAAATCTGATGCTCCAAA
GACATCTCATGGGAAGCTTTTTGTTCTCAAACCAGTATGGGAAAATGGTGTCTCCCCTTCTCCAAAGGATGTTGCTAGTCCGACAAATACTTCCAGCAGA
ACTGCGAATAGCCAACTTGCTGCTCCTTCAGTTCCATCTGCACCTGTGAGGAGTCCAAACAACCCAAAGCTTTCTCTAGGGGAGCGCAAGCCAACTAGCT
TGAATTTAAATTCAGGATTTGGTGGGGAAAAGAGAGCCCAGAGCAGGAATGATTTCTTTAATGACCTGAAGAAGAAAACTGCTATGAACACTTCTTCGGT
TGCATATTCAACGTCTGTTGTTTTGTCTACCACCAGTGAGAACTCTTGTGAAGTAAACAGGGAAGCTGTCAGTGCCCCGACAAGTCCTCATGCTATTCAG
AATGGTGCTGAATTGACTAGCAATGGTGGGAGTTTAGAAGAGGTTCAAAGATTTTCCGAGGAAGAAGAGGCTAAGTTCCTTCGTTCTCTTGGGTGGGAGG
AAAATTCAGGGGAGGATGAAGGACTCACAGAGGAAGAAATCAATGCCTTCATTCAGGAGTATGTTACAAAGAAGCCATCCCTGAAAGTGTGTCGAGGCAT
GGAACTAAAGCTGAATGAATGTCATGCTGCGAGTTTGGGTGGATCTTCCCTTGCATCCAGCTCTTCTGACTCTGGATCAGATGCTTAA
AA sequence
>Potri.005G172100.3 pacid=42802472 polypeptide=Potri.005G172100.3.p locus=Potri.005G172100 ID=Potri.005G172100.3.v4.1 annot-version=v4.1
MEKSEPSLVPEWLKSTGTVSGAGSLAHHFASSSSHSDVPSLANHTRNRSSKSINDFDSPRPGFLDRTSSSNSRRSSGNGSAKHPYSSFSRSHRDKDRERD
KERSSFMDNWDRDSSDPLGGLLTNRIQKDTLRRSSSLVSRKHVELMPRRAASDLKNGSGNTHTNGNGLISGGSFGSSSQKAVFEKDFPSLGSEDRQGVPD
IARVSSPGLSSSVQSLPVGSSALIGGEGWTSALAEVPAIIANSSTSSSSAAQTVVASSSGTSSGMAGLNMAETLTQAPSRTRTAPQLSVQTQRLEELAIK
QSRQLIPVTPSMPKNLVPSSSDKSKPKTGIRPAEMNTAAKSLHQQSSSLHLANQSSVGVNVKSDAPKTSHGKLFVLKPVWENGVSPSPKDVASPTNTSSR
TANSQLAAPSVPSAPVRSPNNPKLSLGERKPTSLNLNSGFGGEKRAQSRNDFFNDLKKKTAMNTSSVAYSTSVVLSTTSENSCEVNREAVSAPTSPHAIQ
NGAELTSNGGSLEEVQRFSEEEEAKFLRSLGWEENSGEDEGLTEEEINAFIQEYVTKKPSLKVCRGMELKLNECHAASLGGSSLASSSSDSGSDA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G36990 unknown protein Potri.005G172100
[exp]
0 1
AT1G03910 unknown protein Potri.006G118700
[exp]
1.00 0.8758
AT1G36990 unknown protein Potri.002G089100
[exp]
4.24 0.8655
AT5G17930 MIF4G domain-containing protei... Potri.013G061400
[exp]
4.89 0.8521
AT2G28600 P-loop containing nucleoside t... Potri.010G234000
[exp]
5.47 0.8180
AT3G22980 Ribosomal protein S5/Elongatio... Potri.009G152500
[exp]
9.79 0.8360
AT2G47990 SWA1, EDA13, ED... SLOW WALKER1, EMBRYO SAC DEVEL... Potri.014G135600
[exp]
11.48 0.8395
AT3G51270 protein serine/threonine kinas... Potri.017G001100
[exp]
11.61 0.8200
AT3G13990 Kinase-related protein of unkn... Potri.001G170700
[exp]
13.49 0.8357
AT2G44270 ROL5 repressor of lrx1 (.1.2) Potri.005G083500
[exp]
14.42 0.8080
AT4G33890 unknown protein Potri.009G090500
[exp]
16.30 0.8092

Potri.005G172100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.