Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MEKK1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08500 421 / 5e-141 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT4G08470 382 / 3e-126 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT4G08480 388 / 6e-126 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) AT4G12020 355 / 8e-108 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) AT1G53570 266 / 3e-81 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G63700 270 / 4e-80 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT5G66850 248 / 3e-73 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G54960 235 / 2e-69 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G09000 235 / 5e-69 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT3G06030 215 / 1e-61 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G088900 [exp] 805 / 0 AT4G08500 411 / 4e-137 MAPK/ERK kinase kinase 1 (.1) Potri.001G102900 [exp] 279 / 2e-83 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.005G062500 [exp] 271 / 1e-82 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.015G146700 [exp] 275 / 6e-82 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.012G143900 [exp] 275 / 9e-82 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.007G106800 [exp] 266 / 5e-81 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.003G129000 [exp] 268 / 3e-79 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.007G039800 [exp] 239 / 2e-70 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.005G135100 [exp] 234 / 2e-68 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029657 [exp] 617 / 0 AT4G08480 520 / 9e-180 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) Lus10042698 [exp] 613 / 0 AT4G08500 518 / 5e-179 MAPK/ERK kinase kinase 1 (.1) Lus10028038 [exp] 595 / 0 AT4G08500 494 / 1e-169 MAPK/ERK kinase kinase 1 (.1) Lus10003745 [exp] 506 / 7e-179 AT4G08500 400 / 4e-137 MAPK/ERK kinase kinase 1 (.1) Lus10042750 [exp] 451 / 5e-157 AT4G08500 380 / 8e-129 MAPK/ERK kinase kinase 1 (.1) Lus10032279 [exp] 274 / 1e-81 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10024645 [exp] 273 / 2e-81 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 272 / 5e-81 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 268 / 7e-80 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10002096 [exp] 260 / 2e-75 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.005G172200.2 pacid=42802403 polypeptide=Potri.005G172200.2.p locus=Potri.005G172200 ID=Potri.005G172200.2.v4.1 annot-version=v4.1 ATGCATCACTTACCTCAATTTCTCACTCGTAAGAAGAAAACCAGCTCGATGGACCCGAAAAATCGAAGGAGGCCAAGGCTGGAGAGACGTAATGCGTTGA AGCACATTGACTACGATGCAACGCCTTCGTTTTCATCTCTAGACGACTCGTCATCGTCGTCTTTATTTACTCGATCGCTTGATTTGCCGGATCGGACCAG TTTTCGAATCGAAGGAACCGAAGGTGAGTTAGACCGCATCTGTCGCAGCTTAGGCCTCTCTGGCCCCGAGGATTTCGCGATTCCGGCGGCTGCTTGGGAA GCTATGAAGGCCCGGTCCGCTTCCGATCTTTTGCGGCGGTCCAGATTGTTGGGGCCGGATAGTCCGAAAGCAGCTGAAGAATTTAAAGCGATAGTTGAAA TGACCAATCAGCAAGAGGAGAGGGAATTGTGTGCTGGGGTTTTGAAGAGTGTTAGAGTTAGGGATTCTTCAACTGAGTTGAACACTTGTCATGATATTGA TAATCGTGGTGTGTCAGTTGGAATTAAAGGGCCTAGGCCGCCGCTACTGAAGCCGCCGCCGTCGATGACATTACCAGTGATTGATAAAGAGTGTTCAACT TGGGATTTATTCAGGGATTTTGCACCTGAAAATGATGGAGTGGTTAATAATAACAAAGAATTCAGTTCTGGTGATGATGATGACGGACGAGAAAGAAGAC CGCAAGTAATTGATGCAGCTGTGGATAACAAGAGAGAAGAAGAAGAAGAAAATTTGTTGAGGATAGGTGAAACTGCGGTATTATCAGAGTCGTGTTCGTT TACCACGTCTAATGATGATGATTCGTCAAGTAGTACAACCGAACCCATGTCGAATATTTCCCCTAATTTGAGATTTAGAAGGTCTATTACCGATTGGGAA AAGGGTGAGCTTCTCGGACGTGGGTCATTTGGATCGGTTTATGAAGGAATCTCTGACGATGGATTCTTTTTTGCTGTCAAAGAGGTTTCACTGCTTGATC AGGGAAGTCAGGGAAAACAAAGTATTTATCAACTTGAGCAGGAGATTGCTCTTTTAAGTCGGTTTGAACATGAAAACATAGTTCAATATTATGGCACAGA TAAGGATGAATCAAAACTATATATCTTTCTCGAACTTGTAACTAAGGGCTCCCTTCTAAAACTCTATCAGAGATATAATCTTCGAGATTCCCAAGTTTCT GCATACACAAGACAGATTTTGCATGGTTTGAAGTATCTTCATGATCAGAATGTGGTCCACAGGGATATAAAATGTGCAAATTTATTGGTGGATGCAAATG GCTCAGTAAAACTTGCAGATTTTGGTTTGGCAAAGGCAACTAAATTTAATGATGTTAAATCTTGCAAGGGGACTGCATTCTGGATGGCTCCTGAGGTTGT CAATAATAAAAACCAAGGATATGGGCTTCCAGCTGATATATGGAGTCTGGGATGCACTGTGTTGGAGATGTTAACCCGTCAGATTCCATATTCTGAATTG GAATCTATGCAGGCATTATTTAGGATTGGTAGAGGTGTTCCTCCACTTGTTCCTGATTCTCTCTCAAATGACGCGCGGGACTTTATCCTGCAATGCCTAC AAGTTAATCCAAATGATCGCCCTACTGCTGCCGTGCTCTTAGACCATCCATTTATGAAGAGGCCTCTCCCAACATTCTCGGGTTCAGCATCTCCCTATAT TGGCCGTCGATTGTAG
AA sequence Show only first row Show all	>Potri.005G172200.2 pacid=42802403 polypeptide=Potri.005G172200.2.p locus=Potri.005G172200 ID=Potri.005G172200.2.v4.1 annot-version=v4.1 MHHLPQFLTRKKKTSSMDPKNRRRPRLERRNALKHIDYDATPSFSSLDDSSSSSLFTRSLDLPDRTSFRIEGTEGELDRICRSLGLSGPEDFAIPAAAWE AMKARSASDLLRRSRLLGPDSPKAAEEFKAIVEMTNQQEERELCAGVLKSVRVRDSSTELNTCHDIDNRGVSVGIKGPRPPLLKPPPSMTLPVIDKECST WDLFRDFAPENDGVVNNNKEFSSGDDDDGRERRPQVIDAAVDNKREEEEENLLRIGETAVLSESCSFTTSNDDDSSSSTTEPMSNISPNLRFRRSITDWE KGELLGRGSFGSVYEGISDDGFFFAVKEVSLLDQGSQGKQSIYQLEQEIALLSRFEHENIVQYYGTDKDESKLYIFLELVTKGSLLKLYQRYNLRDSQVS AYTRQILHGLKYLHDQNVVHRDIKCANLLVDANGSVKLADFGLAKATKFNDVKSCKGTAFWMAPEVVNNKNQGYGLPADIWSLGCTVLEMLTRQIPYSEL ESMQALFRIGRGVPPLVPDSLSNDARDFILQCLQVNPNDRPTAAVLLDHPFMKRPLPTFSGSASPYIGRRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Potri.005G172200 [exp]	0	1	MEKK1.1
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Potri.008G031800 [exp]	1.00	0.8708	NAC047,NAC2.2
AT3G09300		ORP3B	OSBP(oxysterol binding protein...		Potri.006G086400 [exp]	1.41	0.8273
AT3G59430			unknown protein		Potri.017G029800 [exp]	1.73	0.8158
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Potri.002G088900 [exp]	4.89	0.7842	Pt-MEKK1.2
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.002G175800 [exp]	6.08	0.7436
AT4G12010			Disease resistance protein (TI...		Potri.017G105201 [exp]	8.00	0.7956
AT1G26810		GALT1	galactosyltransferase1 (.1)		Potri.010G168500 [exp]	9.59	0.7104
AT2G33490			hydroxyproline-rich glycoprote...		Potri.003G166300 [exp]	9.79	0.8107
AT4G36550			ARM repeat superfamily protein...		Potri.005G122100 [exp]	13.03	0.7661
AT5G52530			dentin sialophosphoprotein-rel...		Potri.004G079000 [exp]	13.26	0.7927

Compare expression of checked genes

Potri.005G172200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.