Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08460 219 / 3e-70 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT1G68140 211 / 4e-66 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT1G77770 198 / 4e-62 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT3G24740 159 / 4e-46 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT3G25910 135 / 1e-36 Protein of unknown function (DUF1644) (.1) AT4G31410 133 / 1e-36 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G15430 132 / 1e-36 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G80220 111 / 7e-29 Protein of unknown function (DUF1644) (.1) AT2G26050 88 / 2e-20 Protein of unknown function (DUF1644) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G088700 [exp] 457 / 4e-163 AT4G08460 245 / 2e-80 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.003G021800 [exp] 241 / 9e-78 AT1G68140 315 / 2e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.001G208800 [exp] 236 / 3e-76 AT1G68140 312 / 6e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.018G070500 [exp] 178 / 1e-53 AT3G25910 246 / 2e-79 Protein of unknown function (DUF1644) (.1) Potri.006G154300 [exp] 174 / 4e-52 AT3G25910 152 / 8e-43 Protein of unknown function (DUF1644) (.1) Potri.003G060800 [exp] 164 / 4e-47 AT3G25910 188 / 3e-55 Protein of unknown function (DUF1644) (.1) Potri.002G216600 [exp] 150 / 2e-42 AT3G24740 334 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.006G275400 [exp] 142 / 7e-40 AT4G31410 311 / 4e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.018G006400 [exp] 141 / 2e-39 AT4G31410 331 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024758 [exp] 268 / 5e-89 AT4G08460 251 / 8e-83 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10009772 [exp] 260 / 3e-86 AT4G08460 256 / 3e-85 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10020957 [exp] 237 / 1e-76 AT1G68140 309 / 1e-104 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10004940 [exp] 238 / 2e-76 AT1G68140 319 / 4e-108 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10025356 [exp] 231 / 3e-75 AT1G68140 282 / 3e-95 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10043292 [exp] 171 / 1e-50 AT3G25910 282 / 2e-93 Protein of unknown function (DUF1644) (.1) Lus10019436 [exp] 170 / 3e-50 AT3G25910 277 / 3e-91 Protein of unknown function (DUF1644) (.1) Lus10022809 [exp] 155 / 9e-45 AT3G24740 351 / 1e-120 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10011876 [exp] 154 / 2e-43 AT3G24740 358 / 5e-122 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10020151 [exp] 143 / 1e-40 AT4G31410 363 / 1e-126 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF07800 [poplar] [flax] DUF1644 Protein of unknown function (DUF1644)
Representative CDS sequence Show only first row Show all	>Potri.005G172300.1 pacid=42805122 polypeptide=Potri.005G172300.1.p locus=Potri.005G172300 ID=Potri.005G172300.1.v4.1 annot-version=v4.1 ATGGCAAAAGTTAATAAGGTGCGATGCAAGGCCGATTCCCGGCGGCAGAGAGTGATGCCATATGTGCTGTCACCTTGCTCCCGGAAGGCTGGTAAAGATT GCCACTTGAAGAAAAAACATTTAAAAGCTTCAGAGAAAAAAGATTGGGAAGGTGCAACCTGCTCTGTTTTTCTGGAGCATCCTCACAATGCAGTGCTTCT CCTTTGCTCCTCTTATAACAAGGGCTGCCGTCCATATATGTGTGCCACTAGTCGCCGTTTTTCCAACTGTCTTGAACAATACAAGAAATCTCATACAAAA GTAACTCCTACAGAAGGGGTTCGGCAAGAAAACAGTTCAATGGATCATTCAAGTTTCAGCTTGCATGCGGAGCCAACCTATGAGAGGGTGGAGGTTCCAG AACTTTTATGCCCAATTTGTCGAGGGCAGGTTAAGGGTTGGACAGTGGTGGAACCAGCTCGTAAGCTTCTCAATGCCAAGAAAAGAACCTGCATGCCGGA TAAGTGCTCATTTGCTGGAACTTATAAGCAGCTCAGGAAGCATGTTAAGGCAAAGCACCCTTTGGCACGACCCCGAGCTGTGGACCCTGTACTCGAAGAA AAATGGAAGAAGCTTGAATGTGAAAGAGAGCGAAACGATGGGGCGCTGGTACTTGGTGATTATGTGATCGAGCCAGGGTATAGTGTTCATAATGAGTACG ATTCTGATTCTGATTCTGATTCTGATTCATCCCTGGATGATGGTTTCTTATCTTTGGGGTCGTTTGATAGAGGGCAGAGTAGTGGCACCCGCTTTCGTAA TGAATATCACCAGGACTATGAGTCACTGGATGAGGAGGATTATGGGATGCGCCGATCTGGGGCTATGGGTTCTGCAGCAATATCTGGACTTGGTTTTCAC AGGATACTGCTGGAGAGACCAAGGAGGCGGTGGTATAGATAG
AA sequence Show only first row Show all	>Potri.005G172300.1 pacid=42805122 polypeptide=Potri.005G172300.1.p locus=Potri.005G172300 ID=Potri.005G172300.1.v4.1 annot-version=v4.1 MAKVNKVRCKADSRRQRVMPYVLSPCSRKAGKDCHLKKKHLKASEKKDWEGATCSVFLEHPHNAVLLLCSSYNKGCRPYMCATSRRFSNCLEQYKKSHTK VTPTEGVRQENSSMDHSSFSLHAEPTYERVEVPELLCPICRGQVKGWTVVEPARKLLNAKKRTCMPDKCSFAGTYKQLRKHVKAKHPLARPRAVDPVLEE KWKKLECERERNDGALVLGDYVIEPGYSVHNEYDSDSDSDSDSSLDDGFLSLGSFDRGQSSGTRFRNEYHQDYESLDEEDYGMRRSGAMGSAAISGLGFH RILLERPRRRWYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08460			Protein of unknown function (D...		Potri.005G172300 [exp]	0	1
AT4G35830		ACO1	aconitase 1 (.1.2)		Potri.015G130201 [exp]	2.44	0.9037
					Potri.001G332601 [exp]	2.64	0.8981
AT5G47540			Mo25 family protein (.1)		Potri.016G011300 [exp]	3.16	0.9086
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Potri.008G117400 [exp]	3.31	0.8860
AT2G13810		EDTS5, ALD1	eds two suppressor 5, AGD2-lik...		Potri.007G013200 [exp]	4.69	0.8623
AT5G24810			ABC1 family protein (.1.2)		Potri.012G082950 [exp]	5.83	0.8724
AT3G03550			RING/U-box superfamily protein...		Potri.019G043900 [exp]	6.48	0.8805
AT5G51280			DEAD-box protein abstrakt, put...		Potri.005G047301 [exp]	7.74	0.8790
AT1G67410			Exostosin family protein (.1)		Potri.010G227901 [exp]	8.48	0.8605
AT1G80860		ATPLMT	ARABIDOPSIS PHOSPHOLIPID N-MET...		Potri.003G182400 [exp]	8.94	0.8644

Compare expression of checked genes

Potri.005G172300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.