Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NIA2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G37130 1400 / 0 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT1G77760 1393 / 0 GNR1, NIA1 nitrate reductase 1 (.1) AT3G01910 208 / 2e-59 AT-SO, ATSO, SOX sulfite oxidase (.1.2.3) AT5G17770 166 / 1e-45 CBR1, ATCBR NADH:cytochrome B5 reductase 1 (.1) AT5G20080 161 / 1e-43 FAD/NAD(P)-binding oxidoreductase (.1) AT5G48810 84 / 6e-19 B5#3, ATB5-B, ATCB5-D ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) AT2G32720 84 / 9e-19 B5 #4, B5#4, ATCB5-B ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) AT1G26340 78 / 7e-17 B5 #6, B5#6, ATCB5-A ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) AT5G53560 76 / 3e-16 B5#2, ATB5-A, ATCB5-E ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) AT1G60660 66 / 1e-12 B5 #5, B5#5, ATCB5LP ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G088600 [exp] 1653 / 0 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1) Potri.001G330900 [exp] 205 / 3e-58 AT3G01910 686 / 0.0 sulfite oxidase (.1.2.3) Potri.004G194400 [exp] 167 / 2e-46 AT5G17770 428 / 4e-153 NADH:cytochrome B5 reductase 1 (.1) Potri.009G157000 [exp] 166 / 5e-46 AT5G17770 421 / 3e-150 NADH:cytochrome B5 reductase 1 (.1) Potri.006G218600 [exp] 165 / 3e-45 AT5G20080 511 / 0.0 FAD/NAD(P)-binding oxidoreductase (.1) Potri.013G067300 [exp] 160 / 5e-44 AT5G17770 461 / 6e-166 NADH:cytochrome B5 reductase 1 (.1) Potri.010G246800 [exp] 157 / 6e-43 AT5G17770 379 / 1e-133 NADH:cytochrome B5 reductase 1 (.1) Potri.002G242500 [exp] 79 / 5e-17 AT2G32720 221 / 7e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.010G156900 [exp] 77 / 2e-16 AT1G26340 166 / 4e-54 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038977 [exp] 1450 / 0 AT1G77760 1397 / 0.0 nitrate reductase 1 (.1) Lus10027270 [exp] 1444 / 0 AT1G77760 1380 / 0.0 nitrate reductase 1 (.1) Lus10035402 [exp] 1288 / 0 AT1G77760 1277 / 0.0 nitrate reductase 1 (.1) Lus10031005 [exp] 564 / 0 AT1G77760 559 / 0.0 nitrate reductase 1 (.1) Lus10032048 [exp] 188 / 2e-52 AT3G01910 620 / 0.0 sulfite oxidase (.1.2.3) Lus10035213 [exp] 188 / 2e-52 AT3G01910 615 / 0.0 sulfite oxidase (.1.2.3) Lus10012532 [exp] 195 / 1e-51 AT3G01910 616 / 0.0 sulfite oxidase (.1.2.3) Lus10026774 [exp] 177 / 1e-49 AT5G17770 425 / 1e-151 NADH:cytochrome B5 reductase 1 (.1) Lus10008407 [exp] 175 / 1e-48 AT5G17770 427 / 4e-152 NADH:cytochrome B5 reductase 1 (.1) Lus10041560 [exp] 168 / 3e-46 AT3G01910 546 / 0.0 sulfite oxidase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [poplar] [flax] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain CL0072 [poplar] [flax] Ubiquitin PF00174 [poplar] [flax] Oxidored_molyb Oxidoreductase molybdopterin binding domain CL0091 [poplar] [flax] NAD_Ferredoxin PF00175 [poplar] [flax] NAD_binding_1 Oxidoreductase NAD-binding domain CL0076 [poplar] [flax] FAD_Lum_binding PF00970 [poplar] [flax] FAD_binding_6 Oxidoreductase FAD-binding domain CL0159 [poplar] [flax] E-set PF03404 [poplar] [flax] Mo-co_dimer Mo-co oxidoreductase dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.005G172400.1 pacid=42803880 polypeptide=Potri.005G172400.1.p locus=Potri.005G172400 ID=Potri.005G172400.1.v4.1 annot-version=v4.1 ATGGCGGCTTCCGTCGACAACCGCCAATTCCACCTCGAGCCCAATCTAAACGGGGTGGTTCGTTCCTTCAAATCCGTTCCAACCCACCAGCCCAACTCTC CGGTTAGAACCTTCAACTTCTCGAACCAGGACTTCACTCGCTCCGACCAGAAACCAGTCCCAACATTGGAGGAAGAAGATCGTTCAAGTGACGATGAAGC TGATTATAAGGATCTGATCCGCAAAACCAACAGTGAATTAGAGCCGTCGGTTATTGATTCACGAGATGAAGGAACTGCTGACAACTGGATCGAACGCAAC CCTTCCATGGTCCGTCTTACAGGGAAACATCCCTTTAACTCTGAACCGCCATTGGCTCGTCTCATGCACCACGGGTTCATTACACCGGTCCCCCTTCACT ATGTTCGTAACCATGGTCCTGTCCCAAAGGCCACATGGCAAGACTGGACAGTTGAGGTTTGTGGTCTGGTTAAAAGGCCAGCCCGTTTCACCATGGATAA GCTAGTCAATGAATTCCCAGCCCGTGAACTACCTGTTACTCTAGTTTGCGCAGGTAACAGACGCAAAGAGCAAAACATGGTGAAACAGACAATTGGCTTC AACTGGGGTTCTGCCGGGGTGTCTACTTCAGTGTGGCGTGGTGTACCATTGCATTTGCTGCTCAAGAAGTGTGGGATCTATAGCCGTAAAAAAGGGGCCC TCAATGTTTGTTTTGAAGGTGCTGAGGATCTGCCAGGTGGCGGTGGGTCCAAGTACGGGACCAGTATCAAGAAAGAGTTCGCTATGGATCCATCTCGAGA TATTATTTTAGCCTATATGCAAAACGGTGAGCCTTTGGCCCCGGACCATGGGTTTCCAGTGAGAATGATCATACCAGGTTTTATTGGTGGGCGTATGGTG AAATGGTTAAAGAGAATAATTGTTACCAGTGTAGAGTCAGATAATTATTACCACTACATGGACAACAGAGTACTGCCCTCTCATGTTGATGCAGAGCTAG CCAATGCCGAAGCCTGGTGGTACAAGCCGGAGTATATCATCAATGAGCTGAATATAAACTCGGTGATAACGACGCCGAGTCATGAAGAGATACTGCCAAT TAACTCATGGACAACTCAGAGCCCGTACACGCTGAGGGGTTACGCATATTCTGGTGGTGGGAAAAAAGTGACGCGCGTAGAGGTGACTCTGGATGGTGGA GAAACGTGGCAAGTCTGCAGCTTGGACCATGAAGAGAAGCCCAACAAGTACGGCAAATACTGGTGTTGGTGCTTCTGGTCCCTGGAGGTGGAGGTGCTAG AGCTCCTCGGAGCCAAAGAGATTGCCGTCCGGGCCTGGGACGAAACCCTTAATACTCAGCCGGAGAAGCTCAATTGGAATATCATGGGAATGATGAACAA CTGCTGGTTCCGGGTAAAAACAAATGTCTGCAAACGTCACAAGGGTGAGATAGGGATTATTTTTGAGCACCCCACCGTGCCAGGCAACCAGTCCGGTGGG TGGATGGCCAAGCAAAGGCACCTAGAGAAATCATTGGAGAATATCCAAGCTCTGAAGAAAAGTGTTTCAACACCCTTCATGAATACTTCTTCAAAAACTT TTTCAATGGCTGAAGTCAAGAAACATAATTCGGCTGATTCGGCATGGATAATTGTTCATGGTCACGTCTATGATTGCACTCGCTTCCTTAAAGACCATCC CGGTGGCACTGACAGCATTTTAATCAATGCCGGTACTGATTGCACTGAAGAATTTGATGCTATACACTCTGATAAAGCCAAGAAAATGCTTGAGGATCAT CGGATCGGAGAGTTGGTTAGTTCATCAGCTTACACATCTGATTCAAACGCTTCCTCTCCTAATAACTCAGTACATTTGGCTCCTATCAAAGAAATTGCCT CAATAAGAAATGTTGCTCTTGTTCCACGTGAAAAAATCCCATGCAAGCTTATAAAAAAGGAAATTCTCTCTCATGATGTGCGTCTCTTTCGATTTGCATT GCCATCAGAGGATCAGGTGCTGGGATTGCCAGTGGGGAAGCACATATTCTTATGTGCTACTGTTAATGATAAGTTGTGCATGCGAGCTTATACGCCAGCT AGCACCGTCGACGTGGTGGGGTACTTTGATCTTGTGATCAAGGTTTATTTCAAAGGCGTGCATCCAAAGTTCCCTAATGGAGGGCAGATGTCACAGTACC TTAACTCACTATCACTGGGGTCTGTGATAGACGTGAAGGGTCCATTGGGTCACATTGAATATGTTGGTCGTGGTAAGTTTTTGGTTCGTGACAAGCCCAA GTTTGCCAAGAAACTGACCATGTTGGCTGGTGGGACAGGAATCACACCAATCTATCAACTGATTCAAGCCATTTTAAAAGATCCAGAAGACGATACTGAA ATGTATTTGGTCTATGCGAACCGCACTGAGGACGATATTTTGTTGAGGGACGAACTTGATTCTTGGGCTAAGGAACATGAGAGATTAAAGGTGTGGCATG TTATTCAAGAATCTATTAAGGAAGGATGGCAATACAGTGTTGGGTTCGTTACCGAGAGTATCCTGCGAGAGCATGTGCCAGAAGGATCAGATGATACTCT GGCTTTGGCTTGTGGTCCTCCGCCAATGATTCAATTTGCCGTGCAGCCAAACTTGGAGAAGATGAACTATGATATCAAGGATTCCTTGCTAGTTTTTTAG
AA sequence Show only first row Show all	>Potri.005G172400.1 pacid=42803880 polypeptide=Potri.005G172400.1.p locus=Potri.005G172400 ID=Potri.005G172400.1.v4.1 annot-version=v4.1 MAASVDNRQFHLEPNLNGVVRSFKSVPTHQPNSPVRTFNFSNQDFTRSDQKPVPTLEEEDRSSDDEADYKDLIRKTNSELEPSVIDSRDEGTADNWIERN PSMVRLTGKHPFNSEPPLARLMHHGFITPVPLHYVRNHGPVPKATWQDWTVEVCGLVKRPARFTMDKLVNEFPARELPVTLVCAGNRRKEQNMVKQTIGF NWGSAGVSTSVWRGVPLHLLLKKCGIYSRKKGALNVCFEGAEDLPGGGGSKYGTSIKKEFAMDPSRDIILAYMQNGEPLAPDHGFPVRMIIPGFIGGRMV KWLKRIIVTSVESDNYYHYMDNRVLPSHVDAELANAEAWWYKPEYIINELNINSVITTPSHEEILPINSWTTQSPYTLRGYAYSGGGKKVTRVEVTLDGG ETWQVCSLDHEEKPNKYGKYWCWCFWSLEVEVLELLGAKEIAVRAWDETLNTQPEKLNWNIMGMMNNCWFRVKTNVCKRHKGEIGIIFEHPTVPGNQSGG WMAKQRHLEKSLENIQALKKSVSTPFMNTSSKTFSMAEVKKHNSADSAWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFDAIHSDKAKKMLEDH RIGELVSSSAYTSDSNASSPNNSVHLAPIKEIASIRNVALVPREKIPCKLIKKEILSHDVRLFRFALPSEDQVLGLPVGKHIFLCATVNDKLCMRAYTPA STVDVVGYFDLVIKVYFKGVHPKFPNGGQMSQYLNSLSLGSVIDVKGPLGHIEYVGRGKFLVRDKPKFAKKLTMLAGGTGITPIYQLIQAILKDPEDDTE MYLVYANRTEDDILLRDELDSWAKEHERLKVWHVIQESIKEGWQYSVGFVTESILREHVPEGSDDTLALACGPPPMIQFAVQPNLEKMNYDIKDSLLVF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G37130		NIA2-1, CHL3, B...	CHLORATE RESISTANT 3, ARABIDOP...		Potri.005G172400 [exp]	0	1	NIA2.2
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009100 [exp]	6.48	0.8537
AT1G70250			receptor serine/threonine kina...		Potri.004G014250 [exp]	8.94	0.8326
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125050 [exp]	15.23	0.7848
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Potri.013G035200 [exp]	17.14	0.8221
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Potri.003G141400 [exp]	18.16	0.8121
AT1G78340		ATGSTU22	glutathione S-transferase TAU ...		Potri.005G037801 [exp]	18.97	0.7898
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.005G192000 [exp]	19.74	0.8260
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094600 [exp]	23.55	0.8304
AT2G03710	MADS	AGL3, SEP4	SEPALLATA 4, AGAMOUS-like 3, K...		Potri.001G058200 [exp]	27.92	0.7682
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.009G108832 [exp]	40.02	0.8165

Compare expression of checked genes

Potri.005G172400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.