Plant FIBer expression Database

Potri.005G172500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G172500.3 pacid=42805706 polypeptide=Potri.005G172500.3.p locus=Potri.005G172500 ID=Potri.005G172500.3.v4.1 annot-version=v4.1
ATGGATATACCTCCCAATAGAACCATGAGCAAAAACGAGGCAGAGAAGGATCAAAAGGATAAGATTGTGAAAGCAAGGGCCAACACCAACAGAGTAATCA
TCAGCATATACTCTGAATCTCCGAGAAAACGTTTACAACAAAAACATAATCCCGCCACCAAGAAAACCATGGGAACTCGTGGCTATGATCGCCGGGCTCA
GCTTCTATCCTATGCCAGCGAGCTAAGATGCGCTGGTTCCGAGCCCATGGAGTGGTCCAGACGGAACTCTAGGCCGAGGTCAAAGAAATGGAAATGGTCA
AGTGGACCAGCTAGGATTCGGGAATCATTTCTTAGAATGTTTCAGCAAAAAGAAAGGCAATGGGTGTACGAGCGAATTGTAACAGAAGAAAATGGTGAAG
CAGCCCGGATGTCGGGTTCGAAACGCATTAATAGCAGGAACCAAACGGGAGTCTCCGAAAGCAGAAACCCCAGTTTTTGTGTAAATCTCATCAATCATTT
CAGTTATAATCTTTTCTATCTACACACTGTAGCTAAATAA
AA sequence
>Potri.005G172500.3 pacid=42805706 polypeptide=Potri.005G172500.3.p locus=Potri.005G172500 ID=Potri.005G172500.3.v4.1 annot-version=v4.1
MDIPPNRTMSKNEAEKDQKDKIVKARANTNRVIISIYSESPRKRLQQKHNPATKKTMGTRGYDRRAQLLSYASELRCAGSEPMEWSRRNSRPRSKKWKWS
SGPARIRESFLRMFQQKERQWVYERIVTEENGEAARMSGSKRINSRNQTGVSESRNPSFCVNLINHFSYNLFYLHTVAK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G172500
[exp]
0 1
AT5G04930 ALA1 aminophospholipid ATPase 1 (.1... Potri.008G011461
[exp]
4.24 0.5802
AT1G77810 Galactosyltransferase family p... Potri.005G171400
[exp]
10.19 0.6248
AT2G39110 Protein kinase superfamily pro... Potri.010G225300
[exp]
14.10 0.6411
AT1G05010 ACO4, EAT1, EFE ethylene forming enzyme, ethyl... Potri.011G020900
[exp]
38.20 0.5480 ACO7,Pt-ACO1.3
AT5G06570 alpha/beta-Hydrolases superfam... Potri.009G155800
[exp]
46.54 0.5321
AT1G21695 hydroxyproline-rich glycoprote... Potri.005G181200
[exp]
82.70 0.5228
AT1G47960 ATC/VIF1, C/VIF... cell wall / vacuolar inhibitor... Potri.001G288500
[exp]
91.35 0.5117
AT1G14550 Peroxidase superfamily protein... Potri.010G236890
[exp]
100.73 0.4839
AT3G61700 Plant protein 1589 of unknown ... Potri.015G019500
[exp]
112.40 0.4968
AT2G35615 Eukaryotic aspartyl protease f... Potri.003G105300
[exp]
117.98 0.4717

Potri.005G172500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.