Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PIP5.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21980 1138 / 0 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT1G77740 1134 / 0 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT2G26420 837 / 0 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT3G56960 780 / 0 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT3G07960 776 / 0 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT2G41210 768 / 0 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT1G60890 569 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 557 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G09920 537 / 4e-180 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT1G01460 263 / 7e-80 ATPIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G088100 [exp] 1393 / 0 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 967 / 0 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 942 / 0 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.016G036800 [exp] 787 / 0 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.003G196000 [exp] 753 / 0 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.001G027900 [exp] 741 / 0 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.006G121200 [exp] 595 / 0 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.003G019100 [exp] 525 / 6e-176 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.001G211200 [exp] 448 / 5e-146 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025636 [exp] 1262 / 0 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10018200 [exp] 1261 / 0 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10029661 [exp] 1182 / 0 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10027306 [exp] 758 / 0 AT3G56960 1185 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10039011 [exp] 756 / 0 AT3G56960 1174 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10010458 [exp] 739 / 0 AT3G56960 1147 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10003819 [exp] 738 / 0 AT3G56960 1148 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10008651 [exp] 721 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10002734 [exp] 712 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10039507 [exp] 668 / 0 AT3G07960 942 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF01504 [poplar] [flax] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [poplar] [flax] MORN PF02493 [poplar] [flax] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Potri.005G172800.1 pacid=42803429 polypeptide=Potri.005G172800.1.p locus=Potri.005G172800 ID=Potri.005G172800.1.v4.1 annot-version=v4.1 ATGCGTGAAGGACTTATCGTTGATGAGGTAACCGGCGTCGTTTCAACCACAAAGAAGAAGAAATCAGGAGAGCTAGACAATACTACTACTAATAATAAGC AGCTAGATAAGGTTATACTACTCGTGGCAGACCAAGATATCACAAAACAAGCAGCTATTCCACCACTACCCATTGTTGTTAGCCGCGCTCGATCCCAATC CGCGACCCGCCGTGTCACTCCTGCCACCACGGTCGTCACTGCCAGCAGCTCGTCAGGCACCACTGTAGAAAAGCACCTCCCGAACGGGGATCTCTACATC GGATCATTCTCGGGTCACGCGCCACACGGATCCGGGAAGTACATCTGGACCGACGGGTGTATGTACGAAGGCGAGTGGCGCCGCGGAAAAGCATCTGGGA AAGGGAAATTCTCTTGGCCTTCAGGAGCTACTTTTGAAGGGGGATTTAAGTCGGGTCGGATGGAAGGACCCGGCACTTTTATCGGATCCGAGGGGGACAC GTACCGCGGGTCATGGAGCTCCGATCGAAAACATGGGCATGGGCAGAAAAGGTACGCGAATGGAGATTTCTATGAAGGGACATGGAAGAAGAATTTTCAA GACGGGCAAGGGAGGTATGTGTGGAAAAATGGGAATGAGTATGTTGGTGAGTGGAAAAACGGCGTCATTTCAGGGAGAGGAGTTTTGATTTGGGCTAATG GGAATAGATATGATGGGCAATGGGAAAATGGAGTGCCGAAAGGGAATGGGGTGTTTACATGGCCAGATGGGAGCTGTTATATTGGGAACTTGAATAACAA TATCAAGGATATAAAAGGACAGCAATTGAATGGCACATTTTATCCTGGGAATGGGAAGGAATGTTGTTTAAAAGGGAACAAGAGTGATTTGGTTTTAACC GCTACAACGACGAGGAAGAGATCGTCAGTTGATGGAGGGCGAGGGAGTGGGATGAATTTTCCTAGGATTTGTATTTGGGAAAGTGATGGGGAAGCTGGTG ATATTACCTGTGATATTGTTGATAATGTGGAAGCAGAGATGATTTATCGAGATGGTTTAGGGTTGGATCGAGATGGGATTAGACAGTTTAGAAGGGGCCC CTGTTGTTTTAGTGGTGGAGAGGTTAAGAAACCCGGCCTTCCCATCTCGAAAGGGCATAAGAATTATGATTTGATGCTTAATTTGCAATTGGGTATTAGG TATTCTGTTGGGAAGCATGCCCAGATTTTGAGGGATTTGAAGCCAAGTGATTTTGATCCCAAGGAGAAATTCTGGACGAGGTTTCCACCCGAAGGATCAA AAATTACACCTCCACACCAGTCTTCTGATTTTCGATGGAAGGATTACTGTCCTGTGGTGTTTAGACGTTTGAGAGAGCTTTTTCAAGTAGATCCTGCTGA TTACATGTTAGCTATTTGCGGCAATGATGCCCTTAGAGAGCTTTCTTCTCCGGGGAAGAGTGGAAGCTTCTTTTATCTTACTCAGGACGATAGGTTTATG ATAAAGACAGTAAAGAAATCAGAAGTCAAGGTGCTTATTAGGATGCTTCCCAGTTATTATCAACATGTTTGCCGGTATGAAAATTCACTGGTGACAAAGT TCTTTGGTGTGCATTGTGTTAAACCGATTGGTGGACCAAAGACCCGTTTCATTGTGATGGGCAATCTCTTCTGTTCAGAGTATAGAATACATCGAAGATT TGACCTGAAAGGATCCTCCCATGGCCGCACAGCAGATAAGCCTGAGGGTGAGATTGATGAAACCACAACTCTCAAGGACCTTGATCTCAACTTTGTTTTT CGTCTACAGCGGAATTGGTTCCAGGAGCTTATCAAGCAAATTGATCGTGATTGTGAATTTTTGGAAGCTGAGAAAATCATGGATTATAGTCTCTTGGTTG GTCTACACTTCCGTGATGACAATAATTATGACAAAATGGGATTGTCACCATTTCTTTTGCGATCTGGAAAGAAGGATTCTTATCGGAATGAAAAGTTCAT GCGTGGGTGTCGCTTTCTTGAAGCAGAGCTTCAAGACATGGATCGGGTTTTATCTGGCAGGAAATCTCTAATAAGATTGGGAGCAAACATGCCAGCAACG GCAGAGCGGATGGTGAGGAGGAGTGATTTTGATCAGTATACCCCTGGTGGATTTAGCCATTTGACCCCTTCTCGAAGTGATGAAGTCTACGAAGTGGTCC TTTATTTTGGAATTATTGATATCTTACAAGACTATGATATTAGCAAGAAGTTGGAGCATGCCTACAAATCCTTGCAAGCAGACCCTACCTCAATCTCAGC TGTAGATCCAAAACTCTATTCAAAGAGGTTCCGGGATTTCATTGGGAGAATATTTATAGAAGACAGGTAG
AA sequence Show only first row Show all	>Potri.005G172800.1 pacid=42803429 polypeptide=Potri.005G172800.1.p locus=Potri.005G172800 ID=Potri.005G172800.1.v4.1 annot-version=v4.1 MREGLIVDEVTGVVSTTKKKKSGELDNTTTNNKQLDKVILLVADQDITKQAAIPPLPIVVSRARSQSATRRVTPATTVVTASSSSGTTVEKHLPNGDLYI GSFSGHAPHGSGKYIWTDGCMYEGEWRRGKASGKGKFSWPSGATFEGGFKSGRMEGPGTFIGSEGDTYRGSWSSDRKHGHGQKRYANGDFYEGTWKKNFQ DGQGRYVWKNGNEYVGEWKNGVISGRGVLIWANGNRYDGQWENGVPKGNGVFTWPDGSCYIGNLNNNIKDIKGQQLNGTFYPGNGKECCLKGNKSDLVLT ATTTRKRSSVDGGRGSGMNFPRICIWESDGEAGDITCDIVDNVEAEMIYRDGLGLDRDGIRQFRRGPCCFSGGEVKKPGLPISKGHKNYDLMLNLQLGIR YSVGKHAQILRDLKPSDFDPKEKFWTRFPPEGSKITPPHQSSDFRWKDYCPVVFRRLRELFQVDPADYMLAICGNDALRELSSPGKSGSFFYLTQDDRFM IKTVKKSEVKVLIRMLPSYYQHVCRYENSLVTKFFGVHCVKPIGGPKTRFIVMGNLFCSEYRIHRRFDLKGSSHGRTADKPEGEIDETTTLKDLDLNFVF RLQRNWFQELIKQIDRDCEFLEAEKIMDYSLLVGLHFRDDNNYDKMGLSPFLLRSGKKDSYRNEKFMRGCRFLEAELQDMDRVLSGRKSLIRLGANMPAT AERMVRRSDFDQYTPGGFSHLTPSRSDEVYEVVLYFGIIDILQDYDISKKLEHAYKSLQADPTSISAVDPKLYSKRFRDFIGRIFIEDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Potri.005G172800 [exp]	0	1	Pt-PIP5.1
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Potri.001G392601 [exp]	2.82	0.8424
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.015G130701 [exp]	8.48	0.8655
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.008G077800 [exp]	10.95	0.8278
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.001G001700 [exp]	15.87	0.8218
AT5G36740			Acyl-CoA N-acyltransferase wit...		Potri.002G051400 [exp]	18.97	0.8589
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.003G223000 [exp]	23.02	0.8203
AT2G45590			Protein kinase superfamily pro...		Potri.014G072900 [exp]	24.45	0.7933
AT1G03350			BSD domain-containing protein ...		Potri.015G050700 [exp]	30.19	0.7795
AT5G36740			Acyl-CoA N-acyltransferase wit...		Potri.005G211100 [exp]	30.62	0.8242
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Potri.012G133400 [exp]	32.72	0.7397

Compare expression of checked genes

Potri.005G172800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.