Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SDG944,SDG37.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17900 657 / 0 ASHR1, SDG37 ASH1-related 1, SET domain group 37 (.1) AT2G19640 92 / 3e-20 SDG39, ASHR2 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) AT1G33400 66 / 3e-11 TPR9 tetratricopeptide repeat 9, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G26760 63 / 3e-10 SDG35, ATXR1 SET domain protein 35 (.1) AT3G21820 52 / 7e-07 SDG36, ATXR2 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) AT5G06620 50 / 1e-06 SDG38, ATXR4 SET domain protein 38 (.1) AT1G43245 49 / 5e-06 SET domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G071700 [exp] 74 / 6e-14 AT2G19640 416 / 2e-144 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Potri.016G144200 [exp] 60 / 2e-09 AT1G33400 700 / 0.0 tetratricopeptide repeat 9, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G089500 [exp] 57 / 1e-08 AT1G26760 646 / 0.0 SET domain protein 35 (.1) Potri.017G038700 [exp] 53 / 3e-07 AT3G21820 645 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) Potri.006G196566 [exp] 51 / 3e-07 AT5G06620 229 / 2e-75 SET domain protein 38 (.1) Potri.005G193500 [exp] 50 / 3e-06 AT1G43245 262 / 2e-79 SET domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029712 [exp] 649 / 0 AT2G17900 615 / 0.0 ASH1-related 1, SET domain group 37 (.1) Lus10004628 [exp] 64 / 1e-10 AT2G19640 399 / 4e-138 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Lus10026687 [exp] 60 / 1e-09 AT2G19640 400 / 3e-138 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Lus10026202 [exp] 59 / 5e-09 AT1G33400 655 / 0.0 tetratricopeptide repeat 9, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013535 [exp] 57 / 1e-08 AT5G06620 367 / 2e-127 SET domain protein 38 (.1) Lus10015102 [exp] 55 / 1e-07 AT3G21820 613 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) Lus10037155 [exp] 52 / 1e-06 AT1G26760 573 / 0.0 SET domain protein 35 (.1) Lus10031573 [exp] 50 / 2e-06 AT3G21820 603 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) Lus10018874 [exp] 44 / 0.0002 AT1G43245 347 / 1e-112 SET domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain CL0175 [poplar] [flax] TRASH PF01753 [poplar] [flax] zf-MYND MYND finger CL0020 [poplar] [flax] TPR PF13424 [poplar] [flax] TPR_12 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.005G173100.1 pacid=42804645 polypeptide=Potri.005G173100.1.p locus=Potri.005G173100 ID=Potri.005G173100.1.v4.1 annot-version=v4.1 ATGGAGGAATTGCAAAATGTTGTTAGAGATGGTGGATTAGCTGTGTCTAATCTTCCGGAGAAAGGACGATGTCTGCTCACCACCAAGAATTTCAATCCAG GAGAAGTGATTTTAAGGCAAGAGCCCTATGTCTGTGTACCAAACAACTCCTCTACTGTCTCGAGATGTGATGGATGTTTTGCATCAGAGAGCCTCAAGAA ATGCTCGGCTTGTCAAGTTGTGTGGTACTGTGGAAGCACATGCCAGAAATCAGAGTGGAAGTTGCATCGACTTGAATGCAATGCTCTCTCTCGGCTTGAG AAGGAGAAGCGAAAGGCGGTTACGCCTTCTATTCGTTTGATGGTTAGACTTTACCTTCGTAGAAAATTGCAAAATGAGATGTTCATCCCTACTAGTGTTA CAGACAGTTACAATTTCGTGGAGGCATTGGTGTCGCACTTGAAGGACCTTGATGAGAAGCAACTGGTGCTATATGCACAGATGGCCAACCTTGTCCACTT CATTCTTCAATGGCCTGAGATCAACTTAAAAGAGATTGCCGAGAACTTCTCCAAGCTGGCATGCAATGCCCATACCATTTGTGACTGTGAACTCAGACCT CTAGGCACAGGACTCTATCCTGTTGTTTCCATTATCAACCACAGCTGCATGCCCAATGCTGTGTTGACATTTGAGGGAAAGTCATCTGTTGTTCGAGCTG TAGAGCATATACCAGAAGGAGCAGAGGTGTCGATAGCTTACATAGACACTGCTGGAAGCACTATGACTCGGCAAAAGGCTCTCAAAGAACAGTACTTTTT CACTTGCACATGTCCCCGCTGCATCAAAGTGTACGATGATATCCAAGAAAGTGCGATTCTGGAAGGCTACAGATGCAAAGATGATAGATGCAATGGTTTT TTGCTCCGTGATTCTGAAGACAAAGGATTTATATGCCAAACTTGTGGCCTTCGTAGGAGCAAGGAAGAGGTAAAAAGGATTGTATGTGAAATAACAGCAA TTTCAGACAAGAAACTCAAGTCTACTTCCCCTGGAAATCACGAGGAAGTTATTTCTCTATATAAGATGATTGAGAAACTTCAAATGGAGCTGTGCCATCC TTTTTCAATTAGTTTGATGCGAACTCAAGAAGAACTTCTGAAGATTTTGATGGAGCTAGGAGATTGGAGAGAAGCTCTGGCATATTGCAGATTGACCATT ACTGGATATCAAAGAGTGTATCCAGAGCCTCATCCTTTGCTTGGGTTGCAGTATTATACCTGTGGCAAAATCGAGTGGTTGCTTGGTTACACAGAAGATG CTATCAAGTCACTGACTAGGGCTGTGGATATACTTCGAATTACTCATGGGACAAACAGTCCCTTCATGAAGGAACTCATGATGAAGTTGGACGAAGCACA TGCTGAGGCTTCCTACAATCTTTCATCGAAAGATGAGTAG
AA sequence Show only first row Show all	>Potri.005G173100.1 pacid=42804645 polypeptide=Potri.005G173100.1.p locus=Potri.005G173100 ID=Potri.005G173100.1.v4.1 annot-version=v4.1 MEELQNVVRDGGLAVSNLPEKGRCLLTTKNFNPGEVILRQEPYVCVPNNSSTVSRCDGCFASESLKKCSACQVVWYCGSTCQKSEWKLHRLECNALSRLE KEKRKAVTPSIRLMVRLYLRRKLQNEMFIPTSVTDSYNFVEALVSHLKDLDEKQLVLYAQMANLVHFILQWPEINLKEIAENFSKLACNAHTICDCELRP LGTGLYPVVSIINHSCMPNAVLTFEGKSSVVRAVEHIPEGAEVSIAYIDTAGSTMTRQKALKEQYFFTCTCPRCIKVYDDIQESAILEGYRCKDDRCNGF LLRDSEDKGFICQTCGLRRSKEEVKRIVCEITAISDKKLKSTSPGNHEEVISLYKMIEKLQMELCHPFSISLMRTQEELLKILMELGDWREALAYCRLTI TGYQRVYPEPHPLLGLQYYTCGKIEWLLGYTEDAIKSLTRAVDILRITHGTNSPFMKELMMKLDEAHAEASYNLSSKDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17900		ASHR1, SDG37	ASH1-related 1, SET domain gro...		Potri.005G173100 [exp]	0	1	SDG944,SDG37.1
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Potri.006G039700 [exp]	6.48	0.7342
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Potri.006G099700 [exp]	11.13	0.7997
					Potri.013G082000 [exp]	12.44	0.6945
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Potri.017G067400 [exp]	16.21	0.8057	SYN2.1
AT5G17850			Sodium/calcium exchanger famil...		Potri.019G040301 [exp]	18.33	0.6918
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Potri.006G263400 [exp]	20.71	0.7588
AT5G19150			pfkB-like carbohydrate kinase ...		Potri.008G203600 [exp]	28.86	0.7303
AT5G24750			UDP-Glycosyltransferase superf...		Potri.003G021100 [exp]	30.88	0.7269
AT3G48540			Cytidine/deoxycytidylate deami...		Potri.012G097800 [exp]	35.49	0.7570
					Potri.002G100700 [exp]	36.76	0.6917

Compare expression of checked genes

Potri.005G173100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.