Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43770 186 / 2e-54 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT3G02890 101 / 1e-22 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G16680 94 / 3e-20 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G17850 49 / 1e-06 unknown protein AT5G61120 42 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G110400 [exp] 152 / 9e-42 AT1G43770 135 / 1e-35 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.005G189400 [exp] 145 / 6e-39 AT1G43770 142 / 1e-37 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.019G041900 [exp] 100 / 2e-22 AT5G16680 288 / 6e-79 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.013G077900 [exp] 98 / 2e-21 AT5G16680 536 / 1e-165 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.003G091000 [exp] 80 / 9e-16 AT3G02890 177 / 3e-45 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.014G040100 [exp] 59 / 5e-09 AT5G61120 127 / 1e-31 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028603 [exp] 107 / 8e-25 AT1G43770 106 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10009530 [exp] 95 / 2e-20 AT5G16680 395 / 5e-115 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10020350 [exp] 93 / 9e-20 AT3G02890 439 / 2e-131 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10035396 [exp] 43 / 0.0003 AT5G61120 76 / 4e-15 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G173200.2 pacid=42805235 polypeptide=Potri.005G173200.2.p locus=Potri.005G173200 ID=Potri.005G173200.2.v4.1 annot-version=v4.1 ATGCAAATGGTTCTTGTGGAGAAACATTCGATGAATACAGTTTGTCAAAAGTGCGGTGATCGTGGCTATCCGGAGGCTCTAAATTACTGTGTAAAGTGTA AAGTTGTTGCTGAACACACCTACTGCTTAGATGTTGTTCCCAAGGATTTTGATGAGGATGTGGTTTGGACGTGTTGGTTTTGTTTATCTGGGAATGATGG CGGACATAATAATACGTTGGACAGTTCTAGTTATACCCAATTATTAACGAGTGATCAAGCAGTTAAAGTTGTAAGGAAACAGAAATGGGAGGCATCAGAT GCATACTTGAAAGCTCTGAGAAAGGTAGAGAGACTAAAAAGGGGTCCCTCTTTGCAATCTGGTGAGGCAGAGGCAGCTAAAAGGGTTTGCTTGACTAACT CAACTGATCAAGAATCAGACTGTTCTCACCTTCATAAGGACAAAAGGAGAACACTGGCCCGGGGTGAGAGTTCTGATGAGCATCAAAAAACGAGAGAACA TGGTATAATGATTGTAGAAGATAGGGGTGGCTCGAATGAAGAGGTATTAACTGTTGAAAGAGAATCATTTCAAAATGGCAAGAGTGATCTGCCCAAAATT TCAGACCGTGATTCCAATGTTAATGTACAGCAACCTTTTGAGGAGAACATGAATACACTGTCTGGCAGTGAGAGTTGTGCACAGGATCAGAACTTAAGTG ATCAGAATAGATTGATTCCGGATGTTGGGGGTGGCTCAAATGAAGCGGTAAATTGTATTGAAAAAGAGGCCTCTCAAAATAGCACTGATGATCTGCCAAA AATTTTAGATCGGGATTTCAACACCAATGCACAGCCAATTCTTGATCCCATATGGAGGGGAAATTTTACTATCAACGATGGAAATTTTGATGTTATGAAA GGACTGGTGGCCTATACATCTAACCAAGCATCCCCAAAAGTTCGTGAGACAGCTAGTTTGTTGCCAGGATCTGTTTCTATAGAAATGCTTCCTAGGCATG AAGTGTTTCCGAAAAAGTTTGGTACTTCAGATGTAACAGCTGAAGATATTGGCCTTTATTTCTTCCCGGAAAAAGAGAGAGATGAACGAGCCTTTGATGA GTTAGTAGATAATATAATTGAACAAGACCTTGCCTTGAAAGCTGTTCTTGAGCATGCAGAATTATTGGTTTTTACATCTCTTCAATTACCTTTGCAGAAC TGGAGATATCGGGGAAAGTATTATCTGTGGGGGTTGTTCGGTAGACAGAAGCTTTCTAACTATTCAAGTAGAAGAGAGCATGCTACAGCTTAG
AA sequence Show only first row Show all	>Potri.005G173200.2 pacid=42805235 polypeptide=Potri.005G173200.2.p locus=Potri.005G173200 ID=Potri.005G173200.2.v4.1 annot-version=v4.1 MQMVLVEKHSMNTVCQKCGDRGYPEALNYCVKCKVVAEHTYCLDVVPKDFDEDVVWTCWFCLSGNDGGHNNTLDSSSYTQLLTSDQAVKVVRKQKWEASD AYLKALRKVERLKRGPSLQSGEAEAAKRVCLTNSTDQESDCSHLHKDKRRTLARGESSDEHQKTREHGIMIVEDRGGSNEEVLTVERESFQNGKSDLPKI SDRDSNVNVQQPFEENMNTLSGSESCAQDQNLSDQNRLIPDVGGGSNEAVNCIEKEASQNSTDDLPKILDRDFNTNAQPILDPIWRGNFTINDGNFDVMK GLVAYTSNQASPKVRETASLLPGSVSIEMLPRHEVFPKKFGTSDVTAEDIGLYFFPEKERDERAFDELVDNIIEQDLALKAVLEHAELLVFTSLQLPLQN WRYRGKYYLWGLFGRQKLSNYSSRREHATA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G43770			RING/FYVE/PHD zinc finger supe...		Potri.005G173200 [exp]	0	1
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.013G150100 [exp]	9.79	0.7337
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.010G213700 [exp]	11.13	0.7625
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Potri.001G350200 [exp]	12.80	0.7596
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Potri.008G078200 [exp]	12.96	0.6520
AT5G04810			pentatricopeptide (PPR) repeat...		Potri.010G241300 [exp]	17.32	0.7382
AT4G19600		CYCT1;4	Cyclin family protein (.1)		Potri.010G090400 [exp]	17.32	0.7299
AT3G28430			unknown protein		Potri.006G073600 [exp]	20.07	0.7025
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.005G048900 [exp]	22.62	0.7186	XRN4.1
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Potri.002G213300 [exp]	27.91	0.6892	Pt-PP1.5
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Potri.003G005700 [exp]	31.62	0.6880

Compare expression of checked genes

Potri.005G173200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.