Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77720 832 / 0 PPK1 putative protein kinase 1 (.1) AT4G08470 106 / 1e-23 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT4G08500 102 / 2e-22 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT1G51660 98 / 1e-21 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) AT3G48750 95 / 4e-21 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT4G29810 92 / 1e-19 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) AT3G21220 91 / 2e-19 ATMAP2K_ALPHA, ATMKK5, ATMEK5 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) AT1G71530 93 / 3e-19 Protein kinase superfamily protein (.1.2) AT1G63700 93 / 4e-19 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT2G32510 90 / 6e-19 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G087600 [exp] 1370 / 0 AT1G77720 801 / 0.0 putative protein kinase 1 (.1) Potri.005G172200 [exp] 107 / 5e-24 AT4G08500 421 / 6e-141 MAPK/ERK kinase kinase 1 (.1) Potri.002G088900 [exp] 104 / 5e-23 AT4G08500 411 / 4e-137 MAPK/ERK kinase kinase 1 (.1) Potri.010G249300 [exp] 95 / 7e-21 AT3G21220 474 / 1e-168 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.015G030700 [exp] 94 / 1e-20 AT1G73500 392 / 9e-138 MAP kinase kinase 9 (.1) Potri.004G133500 [exp] 93 / 2e-20 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.008G009800 [exp] 94 / 3e-20 AT3G21220 474 / 9e-169 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.001G102900 [exp] 95 / 8e-20 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.014G155000 [exp] 91 / 2e-19 AT1G05100 317 / 3e-107 mitogen-activated protein kinase kinase kinase 18 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028085 [exp] 875 / 0 AT1G77720 745 / 0.0 putative protein kinase 1 (.1) Lus10025634 [exp] 779 / 0 AT1G77720 650 / 0.0 putative protein kinase 1 (.1) Lus10042698 [exp] 100 / 8e-22 AT4G08500 518 / 5e-179 MAPK/ERK kinase kinase 1 (.1) Lus10003745 [exp] 95 / 5e-21 AT4G08500 400 / 4e-137 MAPK/ERK kinase kinase 1 (.1) Lus10029657 [exp] 98 / 7e-21 AT4G08480 520 / 9e-180 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) Lus10028038 [exp] 97 / 1e-20 AT4G08500 494 / 1e-169 MAPK/ERK kinase kinase 1 (.1) Lus10036106 [exp] 97 / 1e-20 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10035764 [exp] 95 / 1e-20 AT1G51660 500 / 7e-179 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10038755 [exp] 93 / 1e-20 AT3G48750 468 / 7e-169 cell division control 2 (.1) Lus10026790 [exp] 96 / 2e-20 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.005G173300.3 pacid=42802842 polypeptide=Potri.005G173300.3.p locus=Potri.005G173300 ID=Potri.005G173300.3.v4.1 annot-version=v4.1 ATGGACAGGGAGGCTAACCTTCTGGTCCCATCTGCACCTCCGCAAAGAAATCTCGTTCGTCCCGTCACCAACGCCGCCGACACGACGTCTTCTTCCTCCT CGTCCTCCTCCCCGCCGGACTTTCTCCGGCATGTCCAAGCCGCCTTCAAGCGCCACCGCCCCCTTGGTATAATGCAGACGAGTAATAGCACTAAGCCTAG ACGTACGTTAATTCCAAAACGTGAAGCGTCAAGAACTGTAGCTTCAAATGCGGGTCCAACTACAGGCACGAAGAATTCTCAAGATGTTGTTCCATTGAGT AAAGACTCAACTTTGCCAAAAAAGAATCCAGTTACTGTTATCAGGGAAAGTCATGAAGATGCGTCAATCTCACCTCCTTCGTTTCCTGGAACAATCACGA AGACGTTTGATGAGAGTTTCAATCCCTTTGATGCACACAGAGAGCAACCAAAATCTGCTATCGATACTAAAGAGAATAATCCGATGCCCCTGACATGCAT AGAATCTCAACTTGTTGAGGGTAAGAGAAAAGTCCAGTTTTCGACAGTGAACAACACCATTTCCCAGGAAATGGAATGGGATGTGAGCAATCAAGTAGAG GTGTCAAATGTGATCAATGATGAAACAAAGCAGCAGAACATGGAATCAGATCTCACTTTGAGGTCCGATGGAGCTGTACCATCACTGGCAAAGAGAACAA TGGTTATTCAGAATCAGTTGCATCAATTGAGGAACTTTTTAAGCCAACCAGCTACTCAATCTTCTGTTGTTGGACCATCTTGTGCTACCACAACATCTGT TCATTCTACTTCAGCACCCATGCTTAACTCGATGACATATTGCTCTCGTGAGAGTGGTTCTCAAGCTGCAGTTGAGCCTTTGAGGGATGCTAATGCAAAT TCTCAGAGCTTTACTCCAGGGAATTTGGAGCAGCTGTCACCTCCTACATTGAAGGACACAAGTGGCATGCTAATTGACCTGAGAGCCGCTGCAACCCGGC CTTCTACCTCTTCTATCCATTCCCAGTTTAAGGACCTGCCTAAGGAGCAACAGAGAGGTGTGCCTGAAGTAAGTGACATTGCAAACAATCCTTCACTTGT TGTTGATAGGTCCACTGAGGATATTGAACCAGCAGATGATGGTGCTGCTGTACAATCTCAGCCTCCAATGTCCAAAAACCCATCTTCAGATGTGAAGTTG GAGCCTCCTAAACATGAAAAACAAGAAAAAGTTTCAAGTAGTAAAGGTGCATCAGTGCCTCGAAAAAGGAATCTTGACCCTGACTTGTTCTTTAAAGTTA ATGGGAAGCTCTATCAAAGGCTTGGTAAGATAGGAAGTGGAGGAAGCAGTGAGGTTCACAAAGTCATTTCATCAGACTGCACAATTTATGCACTTAAGAA AATCAAGCTCAAGGGTCGTGATTATGGAACTGCATATGGTTTTTGTCAGGAAATTCTTTATCTAAACAAACTAAAGGGGAAGAACAACATTATACAGTTA ATAGATTATGAGGTGACAGATAAAACTTTGCTCCACGAAGTCATGAGTGGCTCTGTAAATAATAAAGATGGAAGAGTCAAAGATGATGGGTGTATATACA TGGTCCTTGAATACGGGGAAATTGATTTGGCTCACATGCTGTCCCAGAAATGGAAGGAGATGGATAGCCCCAACCAGACGATAGATGAGAATTGGCTGAG ATTTTATTGGCAGCAAATACTTCAAGCTGTCAATACCATACATGAGGAACGTATCGTGCACTCTGACCTGAAGCCAGCTAATTTTCTTCTTGTCAAAGGT TCTCTGAAGTTGATTGATTTTGGTATCGCCAAAGCCATAATGAGCGATACTACTAACATTCAAAGGGATTCACAGGTAGGTACCCTAAGCTACATGTCTC CAGAGGCATTCATGTGCAATGAGAGTGATGCTAATGGAAACACCATAAAGTGTGGTCGGCCATCAGATATTTGGTCCCTCGGCTGCATCCTCTACCAAAT GGTGTATGGAAGAACCCCTTTTTCTGCGTACAAAACATTTTGGGCCAAGTTCAAAGTTATAACGGATCCAAACCATGAGATAACTTATGAGCCAGTTTCC AATCCATGGCTTCTTGATCTCATGAAAAGATGCCTGGCTTGGGAGAGGAACGAGAGATGGAGGATCCCTCAATTTCTCCAACATCCTTTTCTTGTTCCAC CAGTACCGACTCAACAATCTGAATCTCAGAATCAAGGTTGTGAACTGCTTCAACTTGTTGCAGAAACTTGTGGCAGTGACCAAGAAGCTTCTATGCTGTG CCATGAGCTCCAACAATTGCTTAACCCAGGCACTCTCATATCCGAGTCATTAACATCACGAGACCAACAATATAAGTTGCTCTCTCAGATGTCTAAGCTT TGTTTTCAGCTCCGGGAATGTTTAGCAAAGTCAGAGGGATTTTAG
AA sequence Show only first row Show all	>Potri.005G173300.3 pacid=42802842 polypeptide=Potri.005G173300.3.p locus=Potri.005G173300 ID=Potri.005G173300.3.v4.1 annot-version=v4.1 MDREANLLVPSAPPQRNLVRPVTNAADTTSSSSSSSSPPDFLRHVQAAFKRHRPLGIMQTSNSTKPRRTLIPKREASRTVASNAGPTTGTKNSQDVVPLS KDSTLPKKNPVTVIRESHEDASISPPSFPGTITKTFDESFNPFDAHREQPKSAIDTKENNPMPLTCIESQLVEGKRKVQFSTVNNTISQEMEWDVSNQVE VSNVINDETKQQNMESDLTLRSDGAVPSLAKRTMVIQNQLHQLRNFLSQPATQSSVVGPSCATTTSVHSTSAPMLNSMTYCSRESGSQAAVEPLRDANAN SQSFTPGNLEQLSPPTLKDTSGMLIDLRAAATRPSTSSIHSQFKDLPKEQQRGVPEVSDIANNPSLVVDRSTEDIEPADDGAAVQSQPPMSKNPSSDVKL EPPKHEKQEKVSSSKGASVPRKRNLDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKKIKLKGRDYGTAYGFCQEILYLNKLKGKNNIIQL IDYEVTDKTLLHEVMSGSVNNKDGRVKDDGCIYMVLEYGEIDLAHMLSQKWKEMDSPNQTIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKG SLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNESDANGNTIKCGRPSDIWSLGCILYQMVYGRTPFSAYKTFWAKFKVITDPNHEITYEPVS NPWLLDLMKRCLAWERNERWRIPQFLQHPFLVPPVPTQQSESQNQGCELLQLVAETCGSDQEASMLCHELQQLLNPGTLISESLTSRDQQYKLLSQMSKL CFQLRECLAKSEGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77720		PPK1	putative protein kinase 1 (.1)		Potri.005G173300 [exp]	0	1
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Potri.007G110800 [exp]	5.09	0.8776
AT1G20060			ATP binding microtubule motor ...		Potri.013G068501 [exp]	7.21	0.8784
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Potri.007G000300 [exp]	12.84	0.8296
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Potri.005G146500 [exp]	13.30	0.8281
AT2G45490		ATAUR3	ataurora3 (.1)		Potri.006G080500 [exp]	14.79	0.8776
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Potri.004G179742 [exp]	15.49	0.7818
AT3G12170			Chaperone DnaJ-domain superfam...		Potri.006G056400 [exp]	17.17	0.8706	Pt-ATJ6.1
AT1G14710			hydroxyproline-rich glycoprote...		Potri.010G102100 [exp]	17.74	0.8498
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Potri.002G208251 [exp]	18.76	0.8721
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Potri.006G156314 [exp]	19.74	0.8585

Compare expression of checked genes

Potri.005G173300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.