Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77700 315 / 4e-107 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75030 206 / 6e-66 ATLP-3 thaumatin-like protein 3 (.1) AT1G18250 201 / 3e-64 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75050 200 / 1e-63 Pathogenesis-related thaumatin superfamily protein (.1) AT1G73620 199 / 8e-63 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 196 / 3e-62 PR-5, PR5 pathogenesis-related gene 5 (.1) AT1G19320 188 / 4e-59 Pathogenesis-related thaumatin superfamily protein (.1) AT2G17860 183 / 6e-57 Pathogenesis-related thaumatin superfamily protein (.1) AT4G36010 184 / 1e-56 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G38660 180 / 1e-54 Pathogenesis-related thaumatin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G087100 [exp] 394 / 3e-139 AT1G77700 384 / 2e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.003G020100 [exp] 272 / 3e-91 AT1G77700 274 / 1e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G210400 [exp] 270 / 2e-90 AT1G77700 273 / 1e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.014G040700 [exp] 198 / 8e-63 AT1G75030 342 / 5e-120 thaumatin-like protein 3 (.1) Potri.015G039200 [exp] 195 / 2e-61 AT1G73620 352 / 1e-123 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112700 [exp] 195 / 5e-61 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.012G047800 [exp] 192 / 1e-60 AT1G73620 379 / 3e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112600 [exp] 190 / 1e-58 AT4G38660 348 / 2e-119 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G240900 [exp] 189 / 3e-58 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025629 [exp] 303 / 5e-102 AT1G77700 377 / 4e-130 Pathogenesis-related thaumatin superfamily protein (.1) Lus10009058 [exp] 200 / 2e-63 AT1G73620 376 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1) Lus10032726 [exp] 194 / 3e-61 AT1G75030 334 / 5e-117 thaumatin-like protein 3 (.1) Lus10028448 [exp] 192 / 7e-60 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028447 [exp] 187 / 1e-57 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 187 / 1e-57 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017266 [exp] 186 / 3e-57 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10013561 [exp] 186 / 5e-57 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10015705 [exp] 180 / 9e-56 AT1G75030 256 / 6e-86 thaumatin-like protein 3 (.1) Lus10037483 [exp] 182 / 1e-55 AT1G75030 242 / 3e-79 thaumatin-like protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF00314 [poplar] [flax] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Potri.005G173900.1 pacid=42802997 polypeptide=Potri.005G173900.1.p locus=Potri.005G173900 ID=Potri.005G173900.1.v4.1 annot-version=v4.1 ATGGCACGTCTTAATCTGAATCTACTGCTGTTGCTGATTCTACTCGTGCTTTCATCAGGGCCAAAAATGATGGAGAGTCTGAGAGTCTTCACCATAACTA ATTATTGCAAAGAAACGGTATGGCCGGGTATCTTCCCAGGTGAGAACTTCAATGGTGGTGGATTTGAGTTGAAACCAGGCCAATCTAGTGTTTTAAATGC TCCGGTTGGCTGGAGTGGCCGGATATGGGGTAGAACAGGCTGTAGTTTTGACAAAAATGGGAACGGTACATGCAAGACTGGGACCTGTGGTTCATTCCTG AAATGCAGGGCCTCAGGTGAAACCCCTGCCTCACTTGCTGAATTTACCCTAACAACACTCGACTTTTACGATGTTAGCCTTGTCGACGGGTTTAACTTGC CGATAGCTGTTACGCCGATCAATGGTAAAGGAAATTGCAGTGTTGCTGGCTGTGATGCAGATTTGAGGGATACTTGCCCTTCAGAGCTGGCTGTTAAGTC CAAGGGAAAGGTCATCGCTTGTCGAAGCGCTTGTGATGTGTTCAACACGGATGAATATTGTTGCAGGGGACTTTATGGAAACCCTAGGGTGTGCCAACCT ACATTTTATTCAAAGAAGTTCAAAGAAGCTTGCCCCACTGCTTATAGCTATGCATATGATGATCCTACCAGTATTTGTACGTGCGCAGGAACAGATTATG TCATCACCTTTTGCTCATCCAGGAAGCGAGAGGCTTGCACCTACCATAATAACAAGCTTATTTGCAGTGGATCAAGAGGCTTAAAATCACTGATTGAGAG ATGGTGGGCTCTCGTTTTCGTATTGCCACTGTTACTTGCCTTCTGA
AA sequence Show only first row Show all	>Potri.005G173900.1 pacid=42802997 polypeptide=Potri.005G173900.1.p locus=Potri.005G173900 ID=Potri.005G173900.1.v4.1 annot-version=v4.1 MARLNLNLLLLLILLVLSSGPKMMESLRVFTITNYCKETVWPGIFPGENFNGGGFELKPGQSSVLNAPVGWSGRIWGRTGCSFDKNGNGTCKTGTCGSFL KCRASGETPASLAEFTLTTLDFYDVSLVDGFNLPIAVTPINGKGNCSVAGCDADLRDTCPSELAVKSKGKVIACRSACDVFNTDEYCCRGLYGNPRVCQP TFYSKKFKEACPTAYSYAYDDPTSICTCAGTDYVITFCSSRKREACTYHNNKLICSGSRGLKSLIERWWALVFVLPLLLAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77700			Pathogenesis-related thaumatin...		Potri.005G173900 [exp]	0	1
AT2G18196			Heavy metal transport/detoxifi...		Potri.011G149500 [exp]	1.41	0.9499
AT2G35585			unknown protein		Potri.010G101500 [exp]	2.44	0.9494
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340600 [exp]	5.83	0.9620
AT3G27030			unknown protein		Potri.017G064500 [exp]	6.48	0.9362
					Potri.006G225400 [exp]	6.92	0.9354
AT1G29380			Carbohydrate-binding X8 domain...		Potri.011G078500 [exp]	8.06	0.9455
AT3G30340			nodulin MtN21 /EamA-like trans...		Potri.011G149000 [exp]	8.60	0.9150
AT5G62350			Plant invertase/pectin methyle...		Potri.012G127500 [exp]	8.66	0.9272
AT1G79480			Carbohydrate-binding X8 domain...		Potri.008G082900 [exp]	9.79	0.9434
AT5G02140			Pathogenesis-related thaumatin...		Potri.006G088100 [exp]	12.80	0.9461

Compare expression of checked genes

Potri.005G173900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.