Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17870 92 / 2e-22 ATCSP3 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) AT4G36020 90 / 1e-21 CSDP1 cold shock domain protein 1 (.1) AT2G21060 88 / 1e-21 ATCSP4, ATGRP2B COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) AT4G38680 77 / 1e-17 ATCSP2, CSDP2, GRP2 COLD SHOCK DOMAIN PROTEIN 2, ARABIDOPSIS THALIANA COLD SHOCK PROTEIN 2, glycine rich protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G086900 [exp] 139 / 7e-42 AT2G17870 89 / 2e-21 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.004G172600 [exp] 99 / 5e-26 AT2G21060 102 / 3e-27 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Potri.009G132000 [exp] 99 / 7e-26 AT2G21060 103 / 1e-27 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Potri.005G112800 [exp] 66 / 4e-13 AT2G17870 86 / 1e-19 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.007G057100 [exp] 64 / 3e-12 AT4G36020 127 / 3e-35 cold shock domain protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028073 [exp] 124 / 1e-35 AT4G36020 115 / 3e-31 cold shock domain protein 1 (.1) Lus10025623 [exp] 112 / 1e-31 ND 81 / 8e-20 Lus10027839 [exp] 96 / 3e-25 AT2G21060 110 / 6e-31 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Lus10005066 [exp] 96 / 4e-25 AT2G17870 122 / 1e-35 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Lus10025058 [exp] 92 / 1e-24 AT2G21060 112 / 6e-33 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Lus10034487 [exp] 71 / 3e-15 AT2G21060 110 / 7e-31 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Lus10028449 [exp] 70 / 2e-14 AT4G36020 158 / 3e-47 cold shock domain protein 1 (.1) Lus10041902 [exp] 69 / 4e-14 AT4G36020 159 / 2e-47 cold shock domain protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle CL0021 [poplar] [flax] OB PF00313 [poplar] [flax] CSD 'Cold-shock' DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G174300.1 pacid=42804345 polypeptide=Potri.005G174300.1.p locus=Potri.005G174300 ID=Potri.005G174300.1.v4.1 annot-version=v4.1 ATGGCTGAGACCAAGAGATCCACTGGCACCGTCAAGTGGTTCAGTGCACAGAAAGGTTTTGGCTTCATAGCTCCCGATGACGGCGGCGAGGATCTGTTTG TCCACCAGACCTCGATCCAGTCCGACGGCTTCCGTACCCTCTCCGACGGACAGCCTGTGGAGTTCTCCGTTGATTCAGGTGAAGACGGCCGCACCAAGGC CGTTGATGTCGTAGGCGTGTCCAAATCTCGCCGTCCTCCTCGTGGAGGCCGCGGTGGCGGGAGGGGGTACTACGGCGGAGGAGGACGAGGCGGCGGTGGT TTTGGAAGAGGCGGCCGTTCAAGTGGTGGAGGATATGGAGGCGGAGGATATGGCGCTGGCGGGGGTGGCGGCGGCGGTGCTTGTTTTAATTGCGGACGGT ACGGTCATTTAGCGAGGGATTGTTATCAGGGTAGCGGTGGTGGTGGGATATATGGTGGCGGTGGAGGCAGAGGATATTCTGGTGGTGGTGGTGGTGGTGG TGGTGGTGGAGGTAGAGGTGGAGGATGCTACAATTGTGGAGAGGAAGGGCATTTTGCGAGAGACTGTCCTAATACTGATAACAAGTGA
AA sequence Show only first row Show all	>Potri.005G174300.1 pacid=42804345 polypeptide=Potri.005G174300.1.p locus=Potri.005G174300 ID=Potri.005G174300.1.v4.1 annot-version=v4.1 MAETKRSTGTVKWFSAQKGFGFIAPDDGGEDLFVHQTSIQSDGFRTLSDGQPVEFSVDSGEDGRTKAVDVVGVSKSRRPPRGGRGGGRGYYGGGGRGGGG FGRGGRSSGGGYGGGGYGAGGGGGGGACFNCGRYGHLARDCYQGSGGGGIYGGGGGRGYSGGGGGGGGGGGRGGGCYNCGEEGHFARDCPNTDNK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17870		ATCSP3	ARABIDOPSIS COLD SHOCK DOMAIN ...		Potri.005G174300 [exp]	0	1
AT5G39790			5'-AMP-activated protein kinas...		Potri.017G125400 [exp]	5.09	0.7712
AT1G56280		ATDI19	drought-induced 19 (.1.2)		Potri.012G086500 [exp]	13.63	0.6682
AT1G05385		Psb27-H1, LPA19	LOW PSII ACCUMULATION 19, phot...		Potri.008G152800 [exp]	16.24	0.7474
AT3G28760			unknown protein		Potri.017G080300 [exp]	25.45	0.7033
AT1G10310			NAD(P)-binding Rossmann-fold s...		Potri.004G228533 [exp]	25.59	0.7386
AT1G69740		HEMB1	Aldolase superfamily protein (...		Potri.002G082300 [exp]	27.27	0.7530	Pt-ALAD.1
AT3G23490		CYN	cyanase (.1)		Potri.010G068200 [exp]	29.08	0.7133	Pt-CYN.1
AT1G02280		PPI1, ATTOC33, ...	PLASTID PROTEIN IMPORT 1, tran...		Potri.002G183400 [exp]	29.58	0.7046	Pt-PPI1.3
AT5G17570			TatD related DNase (.1)		Potri.013G073800 [exp]	36.33	0.7062
					Potri.017G119700 [exp]	41.42	0.7043

Compare expression of checked genes

Potri.005G174300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.