Plant FIBer expression Database

Potri.005G174600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41705 414 / 8e-142 camphor resistance CrcB family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G086800
[exp]
679 / 0 AT2G41705 416 / 1e-142 camphor resistance CrcB family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025622
[exp]
489 / 4e-171 AT2G41705 432 / 6e-149 camphor resistance CrcB family protein (.1.2)
Lus10028072
[exp]
477 / 3e-166 AT2G41705 420 / 5e-144 camphor resistance CrcB family protein (.1.2)
Lus10028071
[exp]
330 / 1e-109 AT2G41705 298 / 1e-97 camphor resistance CrcB family protein (.1.2)
Lus10025621
[exp]
152 / 3e-44 AT2G41705 133 / 1e-37 camphor resistance CrcB family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0184 DMT PF02537 CRCB CrcB-like protein, Camphor Resistance (CrcB)
Representative CDS sequence
>Potri.005G174600.3 pacid=42804275 polypeptide=Potri.005G174600.3.p locus=Potri.005G174600 ID=Potri.005G174600.3.v4.1 annot-version=v4.1
ATGGTTCGTGGAACTAATGAGTCTGAACCCAATCTGAGTGAATCATTTCGTCAGACTAGCAACGTAGGCTCTTCAGTGAGAAGACGTTCTTTAAGTTTAT
CACGCAGCAGATCCTTCCAGGTAGATGATGATATTGAGAGTGAAAACGTGTCAGAGGCAGGTGATATTGGTGACAGGGCTCTTCATAGCAAGAGGCATAA
TGAAATTGGTAGCATCAGCTTATCCATTGACAGCGAGTTAGAAAATGGTACGGTGTTTCCCCTTTCAAATGATAACTTCCTACGATCACATGGGTTGTGG
GCTCATGATTCCACAGCTTTGAATACAAGATCTCCAGTGTTACCTTCGGCAGAAGAAATCGTGTCTCCTATCTCAACTGATGCAGTGGTCTGCTCCAGGG
AAAAACAAGAAGACAAGGAGAAAGCATTTGTGTTGCCACCAGCACTCGAGTATATCTCATGTCTTCTGTATCTAGCAGTTTTTGGAATTCTTGGGGTCTT
AACAAGATATTTATTACAAAAACTCTTTGGCCCTGGTGTTGCTGGTGTGACAAGTGACAACTATCCGCTATATCTTGACCTACCTTCCAATATGGTCGGT
TCGTTCTTGATGGGATGGTGGGGTGTTGTTTTCAAAGAAGACATATCCAAAGTGTCTGGTCATTTGACCATTGGATTAACTACTGGTTACTTGGGAAGTC
TCACAACGTTCAGTGGTTGGAATCAGAAAATGCTTGATCTCAGTGTTAATGGCCATTGGGTGTTTTCTTTTGTTGGCTTTCTCATAGGGTTATTCCTTGC
AGCCTACTCCATAAAATTCGGTGTTGGTACGGCCAAATGTTTCAAGTCACTTTTCCAAAGGTCAAATAGAAGTGCAGATTTAGCTAGCTGGAGGGTGGAC
ACCCCCAATCATCATTTCGCAGTTATGGTGGTATTGGTGGTAATGCTAGGCCTTTTATGGGCTTTAAGTGGAGCACTGCTAAAGGAGGAGTATAACCACG
ACAGTAGTGGGGCTCAGCTATGGCTGGGTTGCATAGTTGCACCCCTAGGGGTGTGGATCAGGTGGTTCTTAGCAAGGCTCAATGGGCGTGGGTTAGGTAA
GGCTGGTTCTCTGAAATGGATTCCATTTGGAACTCTTATTGCAAATGTTTCTGCAGCATGTATCATGGCAGCACTGTCTACTGTGAAGAAAGCGGTGCAT
ACCAAAACCTGTGATACCATTTCAACTGGCATACAGTTTGGATTCTTGGGTTGTCTGAGTACTGTTTCCACTTTCATTGCTGAGTACAATGCAATGGAAG
AAAGCCAAAAAAGCTGGAGAGCTTATGTATATGCCCTAGTAACGATAGTTGTCTCATTTGGCTTGGGGACCTTGATATACTCTGTACCTGTTTGGAGCAG
GGGATACAAGTAG
AA sequence
>Potri.005G174600.3 pacid=42804275 polypeptide=Potri.005G174600.3.p locus=Potri.005G174600 ID=Potri.005G174600.3.v4.1 annot-version=v4.1
MVRGTNESEPNLSESFRQTSNVGSSVRRRSLSLSRSRSFQVDDDIESENVSEAGDIGDRALHSKRHNEIGSISLSIDSELENGTVFPLSNDNFLRSHGLW
AHDSTALNTRSPVLPSAEEIVSPISTDAVVCSREKQEDKEKAFVLPPALEYISCLLYLAVFGILGVLTRYLLQKLFGPGVAGVTSDNYPLYLDLPSNMVG
SFLMGWWGVVFKEDISKVSGHLTIGLTTGYLGSLTTFSGWNQKMLDLSVNGHWVFSFVGFLIGLFLAAYSIKFGVGTAKCFKSLFQRSNRSADLASWRVD
TPNHHFAVMVVLVVMLGLLWALSGALLKEEYNHDSSGAQLWLGCIVAPLGVWIRWFLARLNGRGLGKAGSLKWIPFGTLIANVSAACIMAALSTVKKAVH
TKTCDTISTGIQFGFLGCLSTVSTFIAEYNAMEESQKSWRAYVYALVTIVVSFGLGTLIYSVPVWSRGYK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G41705 camphor resistance CrcB family... Potri.005G174600
[exp]
0 1
AT4G31390 Protein kinase superfamily pro... Potri.006G275600
[exp]
5.38 0.9494
AT2G32480 ARASP ARABIDOPSIS SERIN PROTEASE (.1... Potri.002G228600
[exp]
6.16 0.9470
AT5G13030 unknown protein Potri.001G013900
[exp]
10.09 0.9061
AT1G34000 OHP2 one-helix protein 2 (.1) Potri.005G196100
[exp]
13.41 0.9424 OHP2.1
AT3G19660 unknown protein Potri.017G109900
[exp]
13.67 0.9329
AT1G07650 Leucine-rich repeat transmembr... Potri.004G063600
[exp]
13.85 0.9283
AT3G04870 SPC1, PDE181, Z... SPONTANEOUS CELL DEATH 1, PIGM... Potri.013G037700
[exp]
14.42 0.9145
AT1G14270 CAAX amino terminal protease f... Potri.008G147600
[exp]
15.00 0.9457
AT3G08010 ATAB2 RNA binding (.1) Potri.009G059600
[exp]
16.12 0.9457
Potri.010G120300
[exp]
18.97 0.9247

Potri.005G174600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.