Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77680 1077 / 0 Ribonuclease II/R family protein (.1) AT2G17510 279 / 4e-79 EMB2763 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) AT5G02250 83 / 8e-16 ATMTRNASEII, RNR1, EMB2730 ribonucleotide reductase 1, EMBRYO DEFECTIVE 2730, ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II, Ribonuclease II/R family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G086400 [exp] 1770 / 0 AT1G77680 1062 / 0.0 Ribonuclease II/R family protein (.1) Potri.007G059100 [exp] 281 / 7e-80 AT2G17510 1546 / 0.0 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) Potri.001G137401 [exp] 241 / 7e-74 AT1G77680 63 / 5e-12 Ribonuclease II/R family protein (.1) Potri.004G206650 [exp] 102 / 7e-26 ND / Potri.006G086200 [exp] 87 / 3e-17 AT5G02250 1085 / 0.0 ribonucleotide reductase 1, EMBRYO DEFECTIVE 2730, ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II, Ribonuclease II/R family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025614 [exp] 1201 / 0 AT1G77680 1048 / 0.0 Ribonuclease II/R family protein (.1) Lus10014833 [exp] 1197 / 0 AT1G77680 1033 / 0.0 Ribonuclease II/R family protein (.1) Lus10028065 [exp] 627 / 0 AT1G77680 551 / 1e-179 Ribonuclease II/R family protein (.1) Lus10009880 [exp] 420 / 7e-138 AT1G77680 363 / 5e-117 Ribonuclease II/R family protein (.1) Lus10009879 [exp] 290 / 1e-88 AT1G77680 337 / 9e-107 Ribonuclease II/R family protein (.1) Lus10029500 [exp] 281 / 6e-80 AT2G17510 1543 / 0.0 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) Lus10039601 [exp] 77 / 2e-15 AT2G17510 249 / 2e-77 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) Lus10024387 [exp] 71 / 4e-12 AT5G02250 1066 / 0.0 ribonucleotide reductase 1, EMBRYO DEFECTIVE 2730, ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II, Ribonuclease II/R family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00773 [poplar] [flax] RNB RNB domain
Representative CDS sequence Show only first row Show all	>Potri.005G174800.4 pacid=42804859 polypeptide=Potri.005G174800.4.p locus=Potri.005G174800 ID=Potri.005G174800.4.v4.1 annot-version=v4.1 ATGATGGTGGTTGAGGGGGGTGAGGATAGTGTTGATAAGGAAAAGAAGAAGAATAGGCGCCGATCTAATCGCCGATCCAAACGAAACCCTCCCAATCCAG CTTTTAGTCAACCAAATGAACCACGTGGGGAATCATCACTGTCTGTTGGAAATGGTGGCAAAACAAAATGTTCGAGGCAGCTGGAATTAGATGCAAATCC CATCAGGGAGCATGGACCAACCACAGCATCGGGTATTGTATATAGTTCTATGCCAACTATGCATGCAAACGAACAACTAGAAGACCTGGTGCCATCTGAT CGTGGTGGATCAATGCTGGCTAAGCCATGTCCAGAATCAATTGTTGGTGGAGGTCTCAATGGAAAATCGCTTCCTTTTCACCAGTTTGAGGGTCAAGCTC AGAGTAAAATTTTTGCTCCATACTGGTCCATGGAGACTGTTAATGAGGCGTTGGAGAAAGGTGATGTATTTAAAGTGTTATTTCGTGTAAATGCTCACAA TCGACTTGAGGCATACTGCAAAATTGAGGGAGTTCCTACAGATCTTCTTATCAGTGGAATTGCTGTACAGAACAGGGCTGTGGAAGGTGATGTTGTGGTC ATCGAGGTTGATCCTTTGTCATTCTGGACCAAGATGAAAGGGTCAAATGAGCCATCAAACAATCTTTCCACAGCAGAGGATAGCAATTTACATCTCGAAG CCAATGGAAAAGCTGGTGGTAGTCGCCAAGGTAAAATTAAACTGAACATGGATTGTAAGTATGCTGATTTTGGAAATTCCTTGGTTCCTCATAAGGGGTT TTATTATGGGTATAGTTCATGTGCTGGTGAAGATGTTCATGATGAACTGAATGGGCCAGTGGGTTATAATTATGCTAATGGTTATCACCAGTCTCCTTCA GATTCTTCACATGTTGCTCATTCTATGGGGCAGAGTGAAGTTTTGAATGGTGTGGGGAGGATGTGTTCTATGATTAGTTCATACCCGTCGAAACGACCAA CATGTAGAGTTGTTGCTATAATTGAAAAATCTCCTCGTCGAGATGCTATTATTGGCTTTCTCAATGTTAAGCAGTGGTTTTACTACAAGGAAGGTTGTAA AAAAGATGCAAAAAAGAACAAGAGCTTGCTATCAATTTCAAACTGCGAATACATTGAGATTATGCCTGCTGACCCAAGATTCCCAAAACTGATGGTCCTT GTGAGCAGTTTACCTAACTGCATCAAGAAAAGATTGGAGGATGAAGATGAAACAGTTGAAATGGAATTGGTAGCTGCACAGATTGATAAATGGAGTGATG AAAGTCCCTTTCCAGAAGCCCATGTCTCATATATTTTTGGACGGGGTAGTGAAATGGAGTCGCAAATCAATGCTATTTTACATGAAAATGCAGTTTGTTG TTCTGAATTTTCTCCTGAATCACTTTCCTGTCTTCCAAGCAATACATGGGAGGTGCCAGAAGAAGAATTCCAAAACAGAAGAGATCTTAGGAATTTGTGC ATATTTACCATCGACCCTTCTATTGCTACTGATTTAGATGATGCTCTCTCAGTTCAAAGGTTACCCAATGGCCTTGTCAGAGTGGGTGTCCACATTACTG ATGTGTCATATTTTGTTTTACCTGACACAGCCTTAGACAAAGAAGCTCAGATTCGATCAACCAGTGTTTATATGTCGCAGCGCAAAATACCAATGTTGCC TCCATTGCTTTCTAAGGACGTAGGTTCTCTTAACCCTGGTGTTGATAGGCTCGCATTTTCTATCTTCTGGAACTTGAACAGTTCTGGGAATGTTGTAGAT CGCTGGATTGGTCGCACTGTGATACGATCTTGTTGCAAGCTTTCATATGAACACGCTCGGGAGATTTTTGATGGGATGATTGATGCAGAAACTCACAACA ACTTCAGGGACCTTCCCCAGTTGCACGGTCATTTTGAATGGGCAGATGTAATTGGATCTATTAAGTGTCTTCATGAAATTTCAAAGACTTTAAGGGAAAA GAGGTTTGATGATGGGGCTCTACAGCTTGAAAGTTGTAAAATTGTCTTTTCGTTTGATAAACATGGAGTTCCATATGATAACACACTTTGTGGGCGAAAA GACTCAAATTTTCTCGTTGAGGAGTTTATGCTTTTGGCGAACAGGACCGCTGCTGAAATCATATCTCGAGCTTTTCCAGATAATGCATTGCTGCGGAGGC ACCCTGAACCTAATATACAGAAACTTAAAGAGTTTGAAGCTTTTTGTTGCAAGCATGGTTTAGAATTGGACACTTCTTCTGGTAACTTCCGCCGGTCATT AGAGCACATCAAAGAAAAGCTCAAGGATGACTCTGTGCTACTTAATATTCTTATCAACTATGCTTCAAGGCCAATGCAGTTGGCGACCTACTTTTGTAGT GGTGATTTGAAAGATAATATGAATGATTGGGGTCATTATGCACTGGCTGTTCCTCTCTACACGCATTTTACTTCACCACTGCGCCGATATCCTGATATTG TTGTCCATCGAACACTGGCTGCAGCAATAGAAGCTGAACAATTGTATATGATGAATAGAAGAATGTCTCATAAAGTGAGGCCGGGTGAAGAAGTGACAAG ATGCTTCACTGGTATTTGTTTTCTTAAAGATGCTGCAGGATCCTCAGAAGGCAGGGAAGCATTATCAGCTGCAGCATTAAAGCATAGAATTCCCTGCACA AAATTACTCACAGATGTTGCAGCTTATAGCAATGAGAGAAAGCTGGCTAGCAGGCATGTCAAGGATGCCTGTGATAAGCTCTACATGTGGGTTTCAGTGA AGAGAAAGGAGGTTTTATTGTCTGATGCCAGAGTTTTGGGTCTTGGTCCAAGGTTTATGTCCATTTATATCCACAAACTAGCTTTTGAAAGACGTATATA TTATGATGAAGTTGAAGGCCTCACAGTGGAATGGCTTGAAGCTACATCGACACTGGTGCTAAGTATACATGCCTCCAAATGCTCTGCCAGGAGAGCAGGC CCTGGGTATTACAGGGCACTCGATGAGGTTGCATGGGTCATAAATCCTTGTGATCATAACATGGAACCTGACATGGAGAGTACCCAGGGATGTCATGCAG CCCAGCATTCTGATCCCATTTTGAAATCTGAAATTGATCCTTTTGTTTTCCCTCTCACAGTGCGTCTCCTCTCAACAATCCCTGTTGCACTTCATGCCAC TGGTGGGGATGATGATGGGCCCCGTAATATTGGGGCACGGCTATTCATGAGCTCATATTTTACATAG
AA sequence Show only first row Show all	>Potri.005G174800.4 pacid=42804859 polypeptide=Potri.005G174800.4.p locus=Potri.005G174800 ID=Potri.005G174800.4.v4.1 annot-version=v4.1 MMVVEGGEDSVDKEKKKNRRRSNRRSKRNPPNPAFSQPNEPRGESSLSVGNGGKTKCSRQLELDANPIREHGPTTASGIVYSSMPTMHANEQLEDLVPSD RGGSMLAKPCPESIVGGGLNGKSLPFHQFEGQAQSKIFAPYWSMETVNEALEKGDVFKVLFRVNAHNRLEAYCKIEGVPTDLLISGIAVQNRAVEGDVVV IEVDPLSFWTKMKGSNEPSNNLSTAEDSNLHLEANGKAGGSRQGKIKLNMDCKYADFGNSLVPHKGFYYGYSSCAGEDVHDELNGPVGYNYANGYHQSPS DSSHVAHSMGQSEVLNGVGRMCSMISSYPSKRPTCRVVAIIEKSPRRDAIIGFLNVKQWFYYKEGCKKDAKKNKSLLSISNCEYIEIMPADPRFPKLMVL VSSLPNCIKKRLEDEDETVEMELVAAQIDKWSDESPFPEAHVSYIFGRGSEMESQINAILHENAVCCSEFSPESLSCLPSNTWEVPEEEFQNRRDLRNLC IFTIDPSIATDLDDALSVQRLPNGLVRVGVHITDVSYFVLPDTALDKEAQIRSTSVYMSQRKIPMLPPLLSKDVGSLNPGVDRLAFSIFWNLNSSGNVVD RWIGRTVIRSCCKLSYEHAREIFDGMIDAETHNNFRDLPQLHGHFEWADVIGSIKCLHEISKTLREKRFDDGALQLESCKIVFSFDKHGVPYDNTLCGRK DSNFLVEEFMLLANRTAAEIISRAFPDNALLRRHPEPNIQKLKEFEAFCCKHGLELDTSSGNFRRSLEHIKEKLKDDSVLLNILINYASRPMQLATYFCS GDLKDNMNDWGHYALAVPLYTHFTSPLRRYPDIVVHRTLAAAIEAEQLYMMNRRMSHKVRPGEEVTRCFTGICFLKDAAGSSEGREALSAAALKHRIPCT KLLTDVAAYSNERKLASRHVKDACDKLYMWVSVKRKEVLLSDARVLGLGPRFMSIYIHKLAFERRIYYDEVEGLTVEWLEATSTLVLSIHASKCSARRAG PGYYRALDEVAWVINPCDHNMEPDMESTQGCHAAQHSDPILKSEIDPFVFPLTVRLLSTIPVALHATGGDDDGPRNIGARLFMSSYFT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77680			Ribonuclease II/R family prote...		Potri.005G174800 [exp]	0	1
AT1G63430			Leucine-rich repeat protein ki...		Potri.001G106600 [exp]	1.00	0.8769
AT5G65950			unknown protein		Potri.001G457201 [exp]	2.82	0.8052
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Potri.019G033300 [exp]	5.29	0.7828	TBP1.2,GTF902
AT2G24230			Leucine-rich repeat protein ki...		Potri.006G185100 [exp]	6.70	0.8038
AT5G24810			ABC1 family protein (.1.2)		Potri.012G082950 [exp]	7.74	0.8151
AT4G14305			Peroxisomal membrane 22 kDa (M...		Potri.004G009201 [exp]	11.83	0.7929
AT3G53540			unknown protein		Potri.006G213700 [exp]	13.92	0.8274
AT3G52570			alpha/beta-Hydrolases superfam...		Potri.016G076550 [exp]	20.12	0.7960
AT5G07720			Galactosyl transferase GMA12/M...		Potri.012G068300 [exp]	21.14	0.8228
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.014G115300 [exp]	21.16	0.7954

Compare expression of checked genes

Potri.005G174800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.