Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13930 425 / 2e-149 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) AT4G34850 223 / 2e-70 LAP5 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) AT4G00040 216 / 1e-67 Chalcone and stilbene synthase family protein (.1) AT1G02050 198 / 1e-60 LAP6 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) AT3G52160 54 / 6e-08 KCS15 3-ketoacyl-CoA synthase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G145100 [exp] 433 / 1e-152 AT5G13930 679 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176900 [exp] 419 / 5e-147 AT5G13930 694 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176800 [exp] 417 / 2e-146 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051500 [exp] 411 / 5e-144 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051600 [exp] 411 / 5e-144 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176700 [exp] 409 / 5e-143 AT5G13930 684 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G028600 [exp] 381 / 3e-132 AT5G13930 510 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.012G138800 [exp] 375 / 8e-130 AT5G13930 531 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.009G128800 [exp] 222 / 9e-70 AT4G34850 631 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023670 [exp] 416 / 5e-145 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011746 [exp] 379 / 1e-131 AT5G13930 524 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10041508 [exp] 349 / 1e-120 AT5G13930 473 / 5e-168 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10033717 [exp] 351 / 4e-120 AT5G13930 518 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10031622 [exp] 350 / 6e-120 AT5G13930 526 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10042388 [exp] 221 / 2e-69 AT4G34850 636 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10026286 [exp] 221 / 3e-69 AT4G34850 650 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10011744 [exp] 202 / 4e-65 AT5G13930 283 / 4e-96 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10039904 [exp] 203 / 2e-62 AT1G02050 577 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Lus10002187 [exp] 197 / 3e-60 AT1G02050 576 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF00195 [poplar] [flax] Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain CL0046 [poplar] [flax] Thiolase PF02797 [poplar] [flax] Chal_sti_synt_C Chalcone and stilbene synthases, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G175200.1 pacid=42804887 polypeptide=Potri.005G175200.1.p locus=Potri.005G175200 ID=Potri.005G175200.1.v4.1 annot-version=v4.1 ATGTGTACCTATGATGGTCCATCTCTCGATGTGCGCCAAGACGTGCTAGTGACAGAGGTACCCAAACTTGGAATGGAAGCAGCACTAAAAGCTATTGAAG AGTGGGGGCGACCTAAATCCAACATCACACACCTCATATTCTCTGCACTTGCTGGCATAGATATGCCAGGAGCAGATTATCAACTTACCAGGCTCCTTGG ACTCGAACCATCCATCAAGAGAATCATGCTGTATCACCAGGGCTGTAATATTGGTGCAGCCACCCTTCGCATTGCCAAGGATTTTGCAGAAAACAATGCT GGTGCTCGTGTTCTTGTTGTGTCTTCGGATCTCACTGTCGGTACTTTCCGGGGGCCTTCTAATGACAACATATCTTGTCTGGTAGCCCAAGCAATTACTG GTGAAGGTGCAGCTGCTTTGATCATTGGTGCTGATCCTGATATGTCAGTTGAACGACCATTGTTCCAGATTCTGTCTGCATCACAGACAATCATCCCTGA TTCAAATGATGGAATCAATGGACACCTGCGTGAAGTGGGTCTAACTGTTCACTTTTCAAGGAATGTGCCCGAGTTGATCTCTCGAAATATTGGAAAGTGC TTGGTTGAAGCATTTGGTCCAATTGGTGTTAGTGACTGGAACTCACTGTTTTGGATTGTACAACCGAGTGGTGCAGCAATTCTGAATTTGATTGAAGCCG AAGTTGGTCTGGCACAAGAAAAATTGTCAGCAACTAGACATGTGCTAAGCGAGTTTGGAAACATGGGTGGCCCAACTGTGCTCTTCATTCTAGATGAGAT CAGGAGAAGGTCGTTAGAGAAAAGAAAGACCACGACCGGAGAGGGGATGGAGTGGGGTGTGCTGATTGGATTAGGGGCAGGCATCACCGTGGACACAGTT GTACTGCACAGCGTTCCTATAGCAGAAGGCCGCTGA
AA sequence Show only first row Show all	>Potri.005G175200.1 pacid=42804887 polypeptide=Potri.005G175200.1.p locus=Potri.005G175200 ID=Potri.005G175200.1.v4.1 annot-version=v4.1 MCTYDGPSLDVRQDVLVTEVPKLGMEAALKAIEEWGRPKSNITHLIFSALAGIDMPGADYQLTRLLGLEPSIKRIMLYHQGCNIGAATLRIAKDFAENNA GARVLVVSSDLTVGTFRGPSNDNISCLVAQAITGEGAAALIIGADPDMSVERPLFQILSASQTIIPDSNDGINGHLREVGLTVHFSRNVPELISRNIGKC LVEAFGPIGVSDWNSLFWIVQPSGAAILNLIEAEVGLAQEKLSATRHVLSEFGNMGGPTVLFILDEIRRRSLEKRKTTTGEGMEWGVLIGLGAGITVDTV VLHSVPIAEGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.005G175200 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008402 [exp]	2.64	0.9955
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.011G140600 [exp]	3.46	0.9930
AT4G08910			unknown protein		Potri.014G150900 [exp]	3.87	0.9944
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Potri.008G089700 [exp]	7.00	0.9916
AT5G49040			Disease resistance-responsive ...		Potri.001G023600 [exp]	7.07	0.9935
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Potri.003G192650 [exp]	7.93	0.9900
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008100 [exp]	8.94	0.9898
AT2G42840		PDF1	protodermal factor 1 (.1)		Potri.002G060800 [exp]	10.90	0.9840
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Potri.001G470700 [exp]	12.72	0.9831	Pt-PETF.2
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.006G206800 [exp]	16.24	0.9905	CTS2.10

Compare expression of checked genes

Potri.005G175200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.