Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77670 394 / 2e-138 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G22250 95 / 9e-23 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) AT5G36160 59 / 3e-10 Tyrosine transaminase family protein (.1) AT2G20610 57 / 2e-09 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT4G28410 57 / 2e-09 Tyrosine transaminase family protein (.1) AT2G24850 56 / 5e-09 TAT3 tyrosine aminotransferase 3 (.1) AT4G28420 54 / 2e-08 Tyrosine transaminase family protein (.1.2) AT4G23600 52 / 4e-08 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3) AT4G23590 52 / 6e-08 Tyrosine transaminase family protein (.1) AT5G53970 50 / 3e-07 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G175400 [exp] 440 / 5e-156 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G086000 [exp] 429 / 6e-152 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.014G124100 [exp] 165 / 4e-49 AT1G77670 289 / 6e-94 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G088426 [exp] 95 / 1e-22 AT2G22250 643 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.005G079200 [exp] 91 / 3e-21 AT2G22250 649 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.017G014100 [exp] 59 / 3e-10 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014200 [exp] 56 / 4e-09 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.007G137950 [exp] 56 / 5e-09 AT5G53970 504 / 2e-178 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013800 [exp] 54 / 1e-08 AT5G36160 520 / 0.0 Tyrosine transaminase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004089 [exp] 401 / 8e-141 AT1G77670 685 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10014710 [exp] 389 / 2e-137 AT1G77670 680 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10018962 [exp] 139 / 7e-39 AT1G77670 289 / 2e-93 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10033820 [exp] 101 / 4e-25 AT1G77670 172 / 2e-49 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10032388 [exp] 99 / 7e-24 AT2G22250 681 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10023080 [exp] 99 / 8e-24 AT2G22250 683 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10017704 [exp] 66 / 3e-12 AT5G53970 508 / 4e-180 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10033661 [exp] 64 / 1e-11 AT5G36160 499 / 1e-176 Tyrosine transaminase family protein (.1) Lus10033659 [exp] 62 / 3e-11 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10033660 [exp] 59 / 3e-10 AT5G53970 408 / 3e-142 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Potri.005G175600.2 pacid=42805123 polypeptide=Potri.005G175600.2.p locus=Potri.005G175600 ID=Potri.005G175600.2.v4.1 annot-version=v4.1 ATGTTTACTAGGGAGGCTCTTAGTACTATCGCATCACTTTGCATTGAGACTGATGTACTAGTTTTCACTGATGAAGTTTATGATAAATTGGCTTTCGAAA CAGATCACATTTCTATGGCCTCTCTTCCAGGAATGTATGAACGGACTGTGACTTTGAATTCCTTAGGGAAGACATTCTCCTTGACAGGGTGGAAAATTGG CTGGGCAATAGCGCCTCCTCACTTGACATGGGGAGTGCGGCAGGCGCACTCTTTCCTTACTTTTGCTACCTCCACTCCTATGCAGTGGGCGGCTGCGGTT GCTCTCAGAGCCCCAGAATCCTACTATGTTGAGTTAAAGAGGGATTACATGGCAAAGAAGGAAATCTTGGTTGAGGGGTTGAAGGCTGTTGGTTTCAAAG TATTTCCATCAAGTGGGACTTACTTTGTCGTTGTTGATCACACCCCTTTCGGCCTGGAAAATGATATTGCATTTTGTGAGTATCTGATCAAGGAAGTCGG GGTGGTAGCAATCCCAACAAGTGTATTTTACTTGAACCCGGAAGATGGAAAGAATTTGGTGAGATTCACCTTCTGCAAAGATGAAGAAACTCTGAAGGCT GCAGTCGAGAGGATGAAGGAGAAGCTGAAGAGAAAATGA
AA sequence Show only first row Show all	>Potri.005G175600.2 pacid=42805123 polypeptide=Potri.005G175600.2.p locus=Potri.005G175600 ID=Potri.005G175600.2.v4.1 annot-version=v4.1 MFTREALSTIASLCIETDVLVFTDEVYDKLAFETDHISMASLPGMYERTVTLNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAAAV ALRAPESYYVELKRDYMAKKEILVEGLKAVGFKVFPSSGTYFVVVDHTPFGLENDIAFCEYLIKEVGVVAIPTSVFYLNPEDGKNLVRFTFCKDEETLKA AVERMKEKLKRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Potri.005G175600 [exp]	0	1
AT3G10620		ATNUDX26	nudix hydrolase homolog 26 (.1...		Potri.010G242100 [exp]	1.73	0.8541
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Potri.005G175400 [exp]	4.79	0.8913
AT4G29660		EMB2752	embryo defective 2752 (.1)		Potri.012G001800 [exp]	9.21	0.8364
AT5G51040			unknown protein		Potri.015G108300 [exp]	11.95	0.8214
AT5G40500			unknown protein		Potri.017G071300 [exp]	16.00	0.8024
AT2G04340			unknown protein		Potri.014G169500 [exp]	38.57	0.7474
AT5G57060			unknown protein		Potri.003G044400 [exp]	43.24	0.7898
AT1G76405			unknown protein		Potri.005G255100 [exp]	44.09	0.8280
AT5G56940			Ribosomal protein S16 family p...		Potri.004G217400 [exp]	47.01	0.7608	Pt-RPS16.2
AT4G29260			HAD superfamily, subfamily III...		Potri.006G152900 [exp]	49.35	0.8059

Compare expression of checked genes

Potri.005G175600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.