Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44835 377 / 1e-131 YbaK/aminoacyl-tRNA synthetase-associated domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G085700 [exp] 95 / 2e-24 AT1G44835 0 / 1 YbaK/aminoacyl-tRNA synthetase-associated domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025613 [exp] 429 / 2e-151 AT1G44835 359 / 3e-124 YbaK/aminoacyl-tRNA synthetase-associated domain (.1.2) Lus10028064 [exp] 396 / 5e-139 AT1G44835 347 / 7e-120 YbaK/aminoacyl-tRNA synthetase-associated domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04073 [poplar] [flax] tRNA_edit Aminoacyl-tRNA editing domain
Representative CDS sequence Show only first row Show all	>Potri.005G175900.1 pacid=42802707 polypeptide=Potri.005G175900.1.p locus=Potri.005G175900 ID=Potri.005G175900.1.v4.1 annot-version=v4.1 ATGGGTTTTACAAAGCAACAGTTGCTTGCTCGCTTGAAGGAGCTTCAAATTAATTTTTCGCAGTATGAACATCCTACTGTTTTGACTGTTGAAGCACAGG CAAAATATGTCGGGGATAAGGGAGGTGGCCTCAGTAAAAATTTATTCTTGAAGGACAAGAAAAGTCGGTTCTATATCGTTTCTGCTCTGGCTGACACGAA AGTAGATATGAAAGTTTTGTCTCAAAGGCTTGGTTTGGGGAAAGGAGGTATAAGAATGGCTCCTGAAGAAGCATTGGGTGAGATACTTCAGGTTCCTTTG GGCTGTGTTACTCCATTTGCACTTGTAAATGAGTCAGCACGGCATGTCTCACTCTTGTTGGATAAAGGATTTCAATCTCAGGAGCATTGCTTTTTCCATC CACTATCTAATGATATGTCAATTGCTCTAAATGCTTGCGATCTTGACAAGTTTCTTAAATCAATAGGAAGAGATCCCTCATACATTGACCTCGAGGCTAA CCCAACTGTAGGGAAGGATCAACCTCCAGATCTTGCTTCTTTTGTTCCATCTGGTTCAACTATTCAGCCAGATCAGCCAGATAAAGCAGCTCCCCTGCAA GATCCTACAGAGAATTCTCTTCCTGTGAATAAGAAGTCTGTAGCTGCCACAGGAAAAGCTGCTAAGCCGCACACCTCCATGCAAAATTCCTCCACGCAAA ATTCTAAAGACAAGCCAGTCAATCCTGTACATCAGCCAAGTGTTTTCTCAGATTCTGGATTGTTTGTGGAAGAGATTCTCAATAAGACATCAGCTCTATT ACTTTCAGAGATCACAGAGGATGCTGCCAAGGAGAATGGTGTAAATCTAGGAACTGTGGTTGCTGAAAATATTAGAAAGCGGCTTAATTCAGATTTGCAA AGCATTGCTACGATGTTTAAGAACACAGCCTATACGCAAGGGTTTCATGCTGGTGCTCACCGTAATTTATAG
AA sequence Show only first row Show all	>Potri.005G175900.1 pacid=42802707 polypeptide=Potri.005G175900.1.p locus=Potri.005G175900 ID=Potri.005G175900.1.v4.1 annot-version=v4.1 MGFTKQQLLARLKELQINFSQYEHPTVLTVEAQAKYVGDKGGGLSKNLFLKDKKSRFYIVSALADTKVDMKVLSQRLGLGKGGIRMAPEEALGEILQVPL GCVTPFALVNESARHVSLLLDKGFQSQEHCFFHPLSNDMSIALNACDLDKFLKSIGRDPSYIDLEANPTVGKDQPPDLASFVPSGSTIQPDQPDKAAPLQ DPTENSLPVNKKSVAATGKAAKPHTSMQNSSTQNSKDKPVNPVHQPSVFSDSGLFVEEILNKTSALLLSEITEDAAKENGVNLGTVVAENIRKRLNSDLQ SIATMFKNTAYTQGFHAGAHRNL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Potri.005G175900 [exp]	0	1
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Potri.008G066800 [exp]	5.09	0.8225
AT4G20150			unknown protein		Potri.003G156301 [exp]	6.92	0.7969
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Potri.008G060000 [exp]	8.00	0.7939	Pt-EIF3.1
AT1G31860		HISN2, AT-IE	HISTIDINE BIOSYNTHESIS 2, hist...		Potri.001G391400 [exp]	11.74	0.7742	Pt-IE.1
AT2G34480			Ribosomal protein L18ae/LX fam...		Potri.004G063300 [exp]	13.41	0.7466	RPL18.6
AT5G45590			Ribosomal protein L35 (.1)		Potri.001G133600 [exp]	13.56	0.7694
AT4G06599			ubiquitin family protein (.1)		Potri.003G011300 [exp]	20.78	0.7542
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Potri.003G120300 [exp]	21.56	0.7117
AT1G12650			unknown protein		Potri.001G110000 [exp]	22.22	0.7407
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Potri.012G061600 [exp]	23.45	0.7744

Compare expression of checked genes

Potri.005G175900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.