Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08290 427 / 1e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G08300 347 / 3e-118 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 343 / 1e-116 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 335 / 1e-113 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 332 / 2e-112 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 328 / 1e-110 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 318 / 2e-106 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 299 / 3e-99 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G56620 277 / 1e-90 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37450 267 / 3e-87 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G085100 [exp] 391 / 1e-135 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 383 / 4e-132 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 348 / 3e-118 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 345 / 7e-117 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 326 / 2e-109 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G082700 [exp] 323 / 4e-109 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 319 / 7e-107 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 312 / 2e-104 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 306 / 5e-102 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003738 [exp] 343 / 2e-116 AT4G08300 453 / 6e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028030 [exp] 341 / 6e-116 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 333 / 2e-112 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 330 / 7e-111 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 327 / 4e-110 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 326 / 1e-109 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024424 [exp] 325 / 5e-109 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 329 / 6e-109 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10025308 [exp] 322 / 2e-103 AT2G37460 487 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 308 / 6e-103 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.005G176100.3 pacid=42802388 polypeptide=Potri.005G176100.3.p locus=Potri.005G176100 ID=Potri.005G176100.3.v4.1 annot-version=v4.1 ATGGGAGACCAAACATCCGCTGGGAAGTTAACTGTAGTTTTCAATAAGATGACACCTTATATCCTAATGGTGTGCGTGCAATTTGGGTCGGCAGGAAATT ACATATTGAGCATGATAAGTCTTAACCGTGGAATGAATCGCTATGTGCTCATTGTGTACCGCAACGGTGTCGCTGCACTTGTTCTTGCTCCTTTTGCTCT GCTTCTTGAAAGGAAAACCAGGCCAAAGATTACGTGGCCAATATTTCTACGAATAATGGCTCTCGGATTCTTAGAGCCGATCCTTGACCAAGGCTTCAGT TACTTGGGGATGCAATACACATCCGCAACGTTTACATCTGCCATTATGAATGCTGTTCCTTCTGTCACTTTTGTGATTGCTTTGATTTTCCGGTTAGAAC GAGTGAGAATTAAGGAAATACGCAGCCAAGCTAAGGTGGTTGGGACCCTAGTAACCTTGGCAGGAGCTTTGCTGATGACAGTTTACAAAGGCCCTGTGAT TGGTCTACCATGGTCTCAAAAAACAAGCCAACACGGAAGTACTGCTGCCTCGTCTGATAAACATTGGGTGACTGGGACACTTTTGCTCCTTGTTGGTTGT GTTTCATGGTCCGCTTTCTACGTATTGCAGATGGAAACGTTAAAGAAGTATCCGGCGGAACTGAGTCTAGCCTCCTTGATATGCTTGGCGGGCAGCATGC AAAGTTTAGCCATAGCCCTTGTTGTAGCACACCACCCTAGCTCATGGGCCGTTGGCTGGGACGCTAGGCTCTTCACTCCCCTTTATACGGGGATTGTTGC CTCTGGAATTACTTATTATGTGCAAGGTCTCGTGATGAAGACAAGAGGCCCGGTATTTGTTACAGCTTTTAATCCCCTCTGCATGATCATAGTCGCTGCC CTTGGGTCTCTTATTTTAGCCGAGAAACTTCATCTTGGAAGTGTTCTTGGAGGCATCATAATCGCAATTGGCCTATATTCTGTTGTGTGGGGTAAGAGGA AGGACTACACTAGCCCAGAAGAATTATCCACCACAGCAGCCAAGGGTAATCAGGAACTCCCGATCGCCACAACCAATATTGCTACAACTTAG
AA sequence Show only first row Show all	>Potri.005G176100.3 pacid=42802388 polypeptide=Potri.005G176100.3.p locus=Potri.005G176100 ID=Potri.005G176100.3.v4.1 annot-version=v4.1 MGDQTSAGKLTVVFNKMTPYILMVCVQFGSAGNYILSMISLNRGMNRYVLIVYRNGVAALVLAPFALLLERKTRPKITWPIFLRIMALGFLEPILDQGFS YLGMQYTSATFTSAIMNAVPSVTFVIALIFRLERVRIKEIRSQAKVVGTLVTLAGALLMTVYKGPVIGLPWSQKTSQHGSTAASSDKHWVTGTLLLLVGC VSWSAFYVLQMETLKKYPAELSLASLICLAGSMQSLAIALVVAHHPSSWAVGWDARLFTPLYTGIVASGITYYVQGLVMKTRGPVFVTAFNPLCMIIVAA LGSLILAEKLHLGSVLGGIIIAIGLYSVVWGKRKDYTSPEELSTTAAKGNQELPIATTNIATT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08290			nodulin MtN21 /EamA-like trans...		Potri.005G176100 [exp]	0	1
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Potri.008G197500 [exp]	3.16	0.7813
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.006G047200 [exp]	5.65	0.7869	ZOG1.16
					Potri.013G045454 [exp]	5.74	0.7804
AT1G14780			MAC/Perforin domain-containing...		Potri.010G104600 [exp]	10.24	0.7994
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025800 [exp]	10.67	0.8080
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Potri.018G066400 [exp]	11.31	0.8053	CDA1.2
AT4G18910		ATNLM2, NIP1;2,...	NOD26-LIKE INTRINSIC PROTEIN 2...		Potri.011G072100 [exp]	15.65	0.7350
AT5G05340			Peroxidase superfamily protein...		Potri.013G156500 [exp]	15.87	0.7882	Pt-PRX1.15
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Potri.013G123500 [exp]	17.14	0.7710
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Potri.009G107500 [exp]	20.49	0.7587

Compare expression of checked genes

Potri.005G176100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.