Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08300 464 / 5e-164 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 453 / 2e-159 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 446 / 7e-157 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 367 / 1e-125 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 357 / 1e-121 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 355 / 5e-121 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G07050 355 / 2e-120 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 302 / 6e-100 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G56620 300 / 2e-99 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 283 / 1e-92 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G085100 [exp] 637 / 0 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 397 / 1e-137 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.010G209200 [exp] 369 / 3e-126 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G082700 [exp] 365 / 3e-125 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 365 / 9e-125 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 363 / 6e-124 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 358 / 8e-122 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 337 / 3e-113 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 336 / 4e-113 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028030 [exp] 471 / 2e-166 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10003738 [exp] 470 / 3e-166 AT4G08300 453 / 6e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024424 [exp] 369 / 4e-126 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 360 / 1e-122 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 359 / 3e-122 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10025308 [exp] 370 / 9e-122 AT2G37460 487 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 356 / 5e-121 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 355 / 3e-120 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 353 / 3e-120 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 352 / 7e-120 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.005G176200.1 pacid=42805680 polypeptide=Potri.005G176200.1.p locus=Potri.005G176200 ID=Potri.005G176200.1.v4.1 annot-version=v4.1 ATGGGAGACCAAACCCCATGTGAGAAGCTGTGCCTAGGGCTCAAGAAAGTTAAACATTACATGGCTATGGTCTCCCTTCAATTTGGATATGCTGGAATGT ACATCATCACCATGGTTTCTCTGAAACATGGCATGAGTCATTACATACTAGCAGTGTACCGTCACGTAGTTGCTACGCTTGTTATTGCACCTTTTGCCTT TGTTCTTGAAAGGAAAATAAGGCCAAAGTTGACACTCTCGATTTTCCTAAGGATAATGGTGCTTGGTTTTCTTGAGCCAGTGCTTGATCAGAATTTGTAT TATTTGGGGATGAAATACACCTCAGCTACATTTTCATCTGCTACAACAAATGCCCTCCCAGCTATAACCTTTCTGATGGCGCTTTGTTTCAGGTTGGAGA CAGTAAACTTTAAGAAGCTACATAGCGCAGCCAAGGCCATCGGAACTGTTATCACGGTCACAGGAGCAATGGTTATGACCTTGTACAAAGGTCCGGTCAT CGATTTTATAAGATCACATGGAGCAGCTCACCATGGAACAAGCAATGAATCCGGTAATCAGCATCTGCTTACCGGAACACTAATGCTCCTAGGTAGTTGC TGTGCCTGGGCAGGTTTCTTCATATTGCAATCATTTACTTTGAAGAAATACCCAGCAGAGCTTTCTCTCACAGCATTGATATGCGTGATGGGCGTGGTGG AAGGTGCAGCAGTGTCCCTTGTTATGGAACGTGACATGGGTGCCTGGAAGATAGGCTTTGACTCTCGGCTTCTTGCTGCTGCTTACTCTGGAGTGGTTTG TTCTGGAATTGCATATTATGTGCAAGGTGTGGTAATAAGGGAACGAGGCCCTGTCTTTGTAACTTCTTTTAGCCCTCTTTGCATGATCACCACTGCAGCT CTTGGATCCCTTGTTCTAGCGGAGCAAATCCACCTTGGAAGTATAATTGGAGCCGTTCTGATAGTTTGGGGGCTTTACACAGTGGTGTGGGGCAAAAGCA AGGAGAGGATAAACTCATCGAAATTGCAAATGACAAATGAGAAAACTGGAACCCAAGAATTGCCTATCAAAGATAGTAGTACTAAGCTATCATCATCAAT CAATTTTGCAAATAGCATCCAAGGACCTGACGATGGAATGTCGAAGATTCCACCCAAATCTTGA
AA sequence Show only first row Show all	>Potri.005G176200.1 pacid=42805680 polypeptide=Potri.005G176200.1.p locus=Potri.005G176200 ID=Potri.005G176200.1.v4.1 annot-version=v4.1 MGDQTPCEKLCLGLKKVKHYMAMVSLQFGYAGMYIITMVSLKHGMSHYILAVYRHVVATLVIAPFAFVLERKIRPKLTLSIFLRIMVLGFLEPVLDQNLY YLGMKYTSATFSSATTNALPAITFLMALCFRLETVNFKKLHSAAKAIGTVITVTGAMVMTLYKGPVIDFIRSHGAAHHGTSNESGNQHLLTGTLMLLGSC CAWAGFFILQSFTLKKYPAELSLTALICVMGVVEGAAVSLVMERDMGAWKIGFDSRLLAAAYSGVVCSGIAYYVQGVVIRERGPVFVTSFSPLCMITTAA LGSLVLAEQIHLGSIIGAVLIVWGLYTVVWGKSKERINSSKLQMTNEKTGTQELPIKDSSTKLSSSINFANSIQGPDDGMSKIPPKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08300			nodulin MtN21 /EamA-like trans...		Potri.005G176200 [exp]	0	1
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Potri.001G189900 [exp]	1.00	0.9991
					Potri.007G034000 [exp]	2.00	0.9984
					Potri.005G168401 [exp]	3.87	0.9981
AT2G43290		MSS3	multicopy suppressors of snf4 ...		Potri.008G079066 [exp]	5.29	0.9844
AT1G32250			Calcium-binding EF-hand family...		Potri.014G030200 [exp]	5.47	0.9834
AT3G03430			Calcium-binding EF-hand family...		Potri.014G030800 [exp]	5.65	0.9743
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Potri.002G014900 [exp]	6.32	0.9715
					Potri.007G034101 [exp]	7.00	0.9969
AT3G30340			nodulin MtN21 /EamA-like trans...		Potri.014G108500 [exp]	7.07	0.9877
AT3G04100	MADS	AGL57	AGAMOUS-like 57 (.1)		Potri.004G130900 [exp]	7.21	0.9435

Compare expression of checked genes

Potri.005G176200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.