Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44790 288 / 3e-100 ChaC-like family protein (.1) AT4G31290 213 / 3e-70 ChaC-like family protein (.1) AT5G26220 209 / 4e-69 ChaC-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G002900 [exp] 210 / 3e-69 AT4G31290 332 / 1e-116 ChaC-like family protein (.1) Potri.006G279000 [exp] 209 / 5e-69 AT4G31290 327 / 5e-115 ChaC-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003737 [exp] 313 / 7e-110 AT1G44790 275 / 2e-94 ChaC-like family protein (.1) Lus10028029 [exp] 288 / 2e-99 AT1G44790 257 / 4e-87 ChaC-like family protein (.1) Lus10020181 [exp] 201 / 3e-65 AT4G31290 342 / 2e-120 ChaC-like family protein (.1) Lus10026985 [exp] 190 / 6e-61 AT4G31290 332 / 5e-116 ChaC-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0278 [poplar] [flax] AIG2 PF04752 [poplar] [flax] ChaC ChaC-like protein
Representative CDS sequence Show only first row Show all	>Potri.005G176300.5 pacid=42805645 polypeptide=Potri.005G176300.5.p locus=Potri.005G176300 ID=Potri.005G176300.5.v4.1 annot-version=v4.1 ATGGCGATGTGGGTATTTGGATATGGGTCTCTAATATGGAAAGCAGGCTTTAACTACGATGATCGTGTCGTTGGTTTAATCAAAGGATATCGCCGTGTAT TTTACCAAGGCAGCACTGACCATAGAGGCACACCAGAGTATCCAGGAAGGACTGTGACTTTAGAACCTGCTGATGGGGAAGTCTGTTGGGGAGTTGCATA TAAGATTTCCAAGAAAGAAGATCAAGAAGTAGCTCTGACGTATTTAGAAGTAAGAGAGAAACAGTATGATGAGAAGGCATATCTTGATTTTTTCACTGAT CCTGCTGCTACAACTCCAGCAGTTTCAGGAGTAATGGTATATATAGGATCTCCAGACAAGAGACATAATCAAAACTATTTGGGGCCTGCACCTCTCGAAG AGATAGCCAAACAGATTTTTTATGCTGAAGGCCCCTCAGGACCCAACAGAGACTACCTCTTCCACCTTGAATCGGCTCTTCTTCAAATTGGATGTAAAGA CAAGCATGTAATTGATCTTGCAAATGAAGTGAGGCGCATTCGTCCAGAGACAGGGCTGGCTGATTCCTGA
AA sequence Show only first row Show all	>Potri.005G176300.5 pacid=42805645 polypeptide=Potri.005G176300.5.p locus=Potri.005G176300 ID=Potri.005G176300.5.v4.1 annot-version=v4.1 MAMWVFGYGSLIWKAGFNYDDRVVGLIKGYRRVFYQGSTDHRGTPEYPGRTVTLEPADGEVCWGVAYKISKKEDQEVALTYLEVREKQYDEKAYLDFFTD PAATTPAVSGVMVYIGSPDKRHNQNYLGPAPLEEIAKQIFYAEGPSGPNRDYLFHLESALLQIGCKDKHVIDLANEVRRIRPETGLADS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G44790			ChaC-like family protein (.1)		Potri.005G176300 [exp]	0	1
AT1G08110			lactoylglutathione lyase famil...		Potri.009G007200 [exp]	1.41	0.7575
AT3G23600			alpha/beta-Hydrolases superfam...		Potri.008G201400 [exp]	1.41	0.7751
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Potri.017G119500 [exp]	2.23	0.7280
AT5G63000			Mitochondrial import inner mem...		Potri.015G078600 [exp]	4.24	0.6997
AT3G28760			unknown protein		Potri.017G080300 [exp]	5.19	0.7374
AT1G79870			D-isomer specific 2-hydroxyaci...		Potri.001G183700 [exp]	6.70	0.6746
AT3G06170			Serinc-domain containing serin...		Potri.008G201900 [exp]	7.00	0.7091
					Potri.002G044400 [exp]	9.38	0.7343
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Potri.004G018200 [exp]	9.53	0.6789
AT1G79260			unknown protein		Potri.010G175600 [exp]	10.00	0.6958

Compare expression of checked genes

Potri.005G176300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.