Plant FIBer expression Database

Potri.005G176400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G08310 153 / 2e-40 unknown protein
AT1G44780 133 / 1e-33 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G085000
[exp]
400 / 3e-134 AT4G08310 285 / 2e-90 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028028
[exp]
226 / 3e-67 AT4G08310 340 / 8e-112 unknown protein
Lus10003736
[exp]
182 / 3e-51 AT4G08310 293 / 5e-94 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09649 CHZ Histone chaperone domain CHZ
Representative CDS sequence
>Potri.005G176400.1 pacid=42804037 polypeptide=Potri.005G176400.1.p locus=Potri.005G176400 ID=Potri.005G176400.1.v4.1 annot-version=v4.1
ATGGCAGAGGAGATGCAAGAGCAAGGCACCGAGACGGTGAAAAAAGAAATGCTCGACATCGAGTCACAAGTCAAGGAAGCTATGGTCTCTCGCGTTAGCC
ACTTCAAAGAACAAGCCGACTCTTTGACGTTTGAGGGAGTGCGAAGACTGCTAGAGAAGGACTTGGGATTGGAAAAATTTGCATTGGATGTGCATAAGAG
ATTTGTCAAGCAGTGTTTGTTTGAGTGCTTAGATGGCGCTGTTGCTGACAATGCCTCTAAGGGCTCTCGGGAAACAGGGGAAAAACATGTTGGTTCTCCA
AAAGAAGGCACAGAATCACCTGAAATACTAGAGTCAAAAAACTATATAAAGGAACCTTCCTCTGAAGAAGAGGAAAAAATGGAAGAATGTCCTGTAACGG
GCCTTTTGACAGGACAAAAAACAACAAAATCAAAGACCAAGGATACTCAAGCAAATGCGATTAAAGTTCCAAGTGACCATGCCTCCAAGGACTTTGGGGG
AACGGGGGGAAAACATGTTGGTTCTCCAAAAGAAGGCACAGAGTCACCTGAAAGACTAGAGTCAAAAAACAATATAAAAGAACCTTCCTCTGAAGAAGAG
GAAAAAATGGAAGACTCTCCTGTAATGGGCCTTATGACAGGAAAAAAGACAACAAAATCAAAAACCAAGGATGCTCAAGCAAACGAGATTAAAGAAGTTC
CAAGTGAAGGCAGCATAAAGAAAGCCATGATGAAACGGGCTTCTTATATCAAAGCTAATTCCGAGGAAATTACAATGGCTGGACTTCGTCGACTCCTAGA
GGATGATCTTAAACTCGATAAATTTTCACTAGATCCCTACAAGAAGTTCATTAGCAAGCAGTTAGATGAGGTATTAAAATCTTCTCGAGTTTCTGAACCT
AAGAAGAAAAATCTTAAGAATAATTCTCATGCTAAAGCATCTAAAAGGGTAAGCAGTGAAGAGAGCGCAGATTCTTCAGATAAAGAGAGCGATGAGGAGG
AAGAAGTAAAACCAAAGAAAAAGAAAACCGGTGCAGAACGAAAGATGCAGAACGCAGAAGGGTCCAAGAAACGGGGAAGACCTGAAAAGGAAATGAAGGT
ATCTGCCAAGAAGCGGATCAAGCCCTCGGAAACAGTGTCGGAGGACAATAATAATGACATGGAAGACAGCGGAAATGTTTCGGAAGACAACGATTCTCCA
TCATCTGCAGAAAAACCACTCAAGAAGAAGGAAGCTTCTACTCCAGCATATGGGAAACGTGTGGAGCTTCTGAAATCAGTCATTAAATCCTGCGGGATGA
GTGTGCCTCCTGTGATTTATAAGAAGGTGAAGCAAGTGGCTGAGAACAAGCGAGAGGCTCAGCTAATAAAGGAACTTGAAGACATACTTTCTAGAGAAGG
ACTGTCATCAAATCCATCTGAAAAAGAGATCAAAGAAGTTAGAAAGAGAAAGGAAAGGGCAAAAGAACTTGAGGGCATTGACTTGAGCAACATTGTGACA
ACTTCACGTAGAAGGTCTGCAACCAGTTTTGTAGCTCCAAAGCCAAAAGTACTAGTTGAAAGTGAGAGTGATGACACTGATGATACAGAGGAGGATGATG
AAGATGGTGAGGACAACAATGAAGATGATGGAGATGACAATGGGGGTGTTGACAGCCCAAGTGAAGAGGCTGATGAGGAGCAAGATGATGGCAGCGACTG
A
AA sequence
>Potri.005G176400.1 pacid=42804037 polypeptide=Potri.005G176400.1.p locus=Potri.005G176400 ID=Potri.005G176400.1.v4.1 annot-version=v4.1
MAEEMQEQGTETVKKEMLDIESQVKEAMVSRVSHFKEQADSLTFEGVRRLLEKDLGLEKFALDVHKRFVKQCLFECLDGAVADNASKGSRETGEKHVGSP
KEGTESPEILESKNYIKEPSSEEEEKMEECPVTGLLTGQKTTKSKTKDTQANAIKVPSDHASKDFGGTGGKHVGSPKEGTESPERLESKNNIKEPSSEEE
EKMEDSPVMGLMTGKKTTKSKTKDAQANEIKEVPSEGSIKKAMMKRASYIKANSEEITMAGLRRLLEDDLKLDKFSLDPYKKFISKQLDEVLKSSRVSEP
KKKNLKNNSHAKASKRVSSEESADSSDKESDEEEEVKPKKKKTGAERKMQNAEGSKKRGRPEKEMKVSAKKRIKPSETVSEDNNNDMEDSGNVSEDNDSP
SSAEKPLKKKEASTPAYGKRVELLKSVIKSCGMSVPPVIYKKVKQVAENKREAQLIKELEDILSREGLSSNPSEKEIKEVRKRKERAKELEGIDLSNIVT
TSRRRSATSFVAPKPKVLVESESDDTDDTEEDDEDGEDNNEDDGDDNGGVDSPSEEADEEQDDGSD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G08310 unknown protein Potri.005G176400
[exp]
0 1
AT3G48800 Sterile alpha motif (SAM) doma... Potri.015G104000
[exp]
1.41 0.8152
AT2G35610 XEG113 xyloglucanase 113 (.1) Potri.004G235800
[exp]
5.19 0.8410
AT1G31930 XLG3 extra-large GTP-binding protei... Potri.012G042500
[exp]
7.34 0.7875
AT1G21200 Trihelix sequence-specific DNA binding ... Potri.002G068700
[exp]
13.74 0.7853
AT4G33890 unknown protein Potri.001G296200
[exp]
16.24 0.7781
AT2G38800 Plant calmodulin-binding prote... Potri.003G201400
[exp]
16.43 0.7899
AT2G06040 unknown protein Potri.006G220600
[exp]
20.00 0.7664
AT3G20770 EIL AtEIN3, EIN3 ETHYLENE-INSENSITIVE3, Ethylen... Potri.004G197400
[exp]
22.71 0.7759 Pt-EIN3.1
AT5G23570 SGS3, ATSGS3 SUPPRESSOR OF GENE SILENCING 3... Potri.003G188350
[exp]
23.23 0.7744
AT1G69490 NAC NAP, ANAC029, A... Arabidopsis NAC domain contain... Potri.014G025700
[exp]
25.09 0.7797 NAC146

Potri.005G176400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.