Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44770 247 / 5e-82 unknown protein AT5G49710 42 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G084900 [exp] 387 / 5e-137 AT1G44770 234 / 7e-77 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014131 [exp] 268 / 3e-90 AT1G44770 295 / 6e-101 unknown protein Lus10034500 [exp] 265 / 5e-89 AT1G44770 287 / 1e-97 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G176500.1 pacid=42805615 polypeptide=Potri.005G176533.1.p locus=Potri.005G176500 ID=Potri.005G176500.1.v4.1 annot-version=v4.1 ATGGGAGGCCACGGCGCTGTTGAGGTAGCGAAGACGGTCATCGAGGTGGCTGACGTGGCTTGGAAAGCCATGGAATTCACCCAACATCACCACCTCCACG AAATTCACCAACATGAATCAGCTCACGACACCAAAAGTAATTCAGTAGATGAAGAATTGGAGTCTTTAAGATCGGAGAATAAGCGTTTGAAGGATTTGCT TGAGCACAACTTGAAACTCCTTCAAAGTTTATCTGAATCTCCTTGCTTATTAAACGATTGCCCTCCTCATCTGTACAGCCGTCTAGTAGCTACTGTGGAT TCTGAGAATTTCTTGACTAAAATTAAATCCCTCCAGCAGGCATCAGTTAATGAAACCGGCATTCAATTCCCTTTTAAGGAGGCTACAGGGGATGATATGC AATTAGTTGAAGTTCTAATCAATGTTGATGGCAAAGAACCTAGTCGGTGGGTTTGGGTGACAGAAGACATGGTTCCTAGCAATGTTGAAGAGCGGAGTGG TATTGATGATGAGAATTATGTGGTGGTGACTGAGGAACGTGTGGTGGATGGGGTTGCTAACTTCATGGCTAAATGCATTGTAGCAAACCCAAAGGCACAG AATTTGACACCAGAGGAGCTGCAGAAAATTTTGGCAAAAGCTCTGGGTGGTGTGAGCAAATTGGAAAAAGTGTTTGGTATCTGGCATGCTGGGACCATGT TTTATACCCTGGGGACCTGGGGGCTGGCTTTGGCAGGATTGTATCGTAGCCGAGCTGTATTGAGGCTTGCAGCAGGGGGCATTCACGCAACCAGCAAGGT TGTTTTGAAGGCCCTCTAA
AA sequence Show only first row Show all	>Potri.005G176500.1 pacid=42805615 polypeptide=Potri.005G176533.1.p locus=Potri.005G176500 ID=Potri.005G176500.1.v4.1 annot-version=v4.1 MGGHGAVEVAKTVIEVADVAWKAMEFTQHHHLHEIHQHESAHDTKSNSVDEELESLRSENKRLKDLLEHNLKLLQSLSESPCLLNDCPPHLYSRLVATVD SENFLTKIKSLQQASVNETGIQFPFKEATGDDMQLVEVLINVDGKEPSRWVWVTEDMVPSNVEERSGIDDENYVVVTEERVVDGVANFMAKCIVANPKAQ NLTPEELQKILAKALGGVSKLEKVFGIWHAGTMFYTLGTWGLALAGLYRSRAVLRLAAGGIHATSKVVLKAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G44770			unknown protein		Potri.005G176500 [exp]	0	1
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Potri.008G203400 [exp]	1.73	0.8488
AT4G00355		ATI2	ATG8-interacting protein 2, un...		Potri.002G160700 [exp]	2.00	0.8662
AT3G53690			RING/U-box superfamily protein...		Potri.013G120300 [exp]	3.46	0.8278
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Potri.004G035500 [exp]	3.46	0.8232
AT2G04690			Pyridoxamine 5'-phosphate oxid...		Potri.001G470300 [exp]	5.29	0.8230
AT3G49800			BSD domain-containing protein ...		Potri.007G006400 [exp]	6.00	0.7994
AT3G47300		SELT	SELT-like protein precursor (....		Potri.001G253000 [exp]	9.48	0.8237
AT5G01990			Auxin efflux carrier family pr...		Potri.016G141700 [exp]	9.48	0.7910
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Potri.011G043800 [exp]	10.00	0.7613
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Potri.014G132300 [exp]	10.95	0.7697

Compare expression of checked genes

Potri.005G176500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.