Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66810 47 / 9e-06 C3HZnF AtC3H14 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G68200 44 / 9e-05 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G084750 [exp] 291 / 6e-99 ND / Potri.010G118700 [exp] 44 / 4e-05 AT1G68200 243 / 1e-79 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.017G119900 [exp] 43 / 0.0002 AT1G66810 221 / 3e-70 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.004G095100 [exp] 42 / 0.0005 AT1G66810 215 / 7e-68 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005731 [exp] 97 / 3e-23 ND / Lus10036165 [exp] 79 / 8e-17 ND / Lus10035256 [exp] 43 / 0.0002 AT1G68200 248 / 6e-81 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10034624 [exp] 43 / 0.0002 AT1G68200 251 / 5e-82 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Potri.005G176900.1 pacid=42803564 polypeptide=Potri.005G176900.1.p locus=Potri.005G176900 ID=Potri.005G176900.1.v4.1 annot-version=v4.1 ATGGAATCGCTAAACAAGTCGGTAAACAAAGACTCCATGCTCGTGACATACTTGCGCGGTGGCGCCGGATCTCCAATTATATCGCCTGGTGGCGACAGAT TCTCTTCCAATTACCAGCGCAACCGAAGCGGGAGTTCCAGATCGCCGCTGTCCCCGCTTGAGAATGTGAAGGCACCGATGATGGCAGAAGATGAAGTTCT GGTGATGGATGGAGTTCTGGTGTCGTCAGTCGTCGGAAGTGGATCATCATCGAATTCTTCCTCTTCTTCGGGAAAGAGCGTGCATAAGAAGGCGCTTTGC AGAGTTTGGGAGGATCTTGGACACTGCCGCTATGCTGCCAACTGTCAGTTTGCACATGGAAAAGAAGAGCTCCATCCAACTCATTTCCCCATCAAGAACA AAGCAGCGGTACATACTTGCAATTCATATGTTACCAGTCCCAGATCAAGCCCATATGTCCCAAAGTGCCGCATTCTTCATCCTGCCATGACAAAAGCTGT GGTTGCTGCAAACCAAACAGCCTTCTCTAAAATACCTGGATATACCAGCATCAGCCCCGTCACCATCTCATCTGAAAAATTCAGCAAGAATAGTACCACC CCATTCTCCACACCTGATCACTTTCTCAGAACCTACATCTCTACCAGGCCAGAACATTGCAATAAAAGCTCAGCTGCCAACATTAAATCTGACTCTAGAA TGGTTTTCACTGCTACCATCAGCTCGGACTACTGGTCACCACAGGATGATGGCATTGAGATTGCCTTGCCTCATCAAACTGATAAATGCATATCAAGGGC AGAAGTGGATGCCTATATTCACAGTGTTCTTTATGGTCCAGCTACAAAGAAGAGGTTGCCTGTGTTCAGTGAGTTTTGCCCTGGATGA
AA sequence Show only first row Show all	>Potri.005G176900.1 pacid=42803564 polypeptide=Potri.005G176900.1.p locus=Potri.005G176900 ID=Potri.005G176900.1.v4.1 annot-version=v4.1 MESLNKSVNKDSMLVTYLRGGAGSPIISPGGDRFSSNYQRNRSGSSRSPLSPLENVKAPMMAEDEVLVMDGVLVSSVVGSGSSSNSSSSSGKSVHKKALC RVWEDLGHCRYAANCQFAHGKEELHPTHFPIKNKAAVHTCNSYVTSPRSSPYVPKCRILHPAMTKAVVAANQTAFSKIPGYTSISPVTISSEKFSKNSTT PFSTPDHFLRTYISTRPEHCNKSSAANIKSDSRMVFTATISSDYWSPQDDGIEIALPHQTDKCISRAEVDAYIHSVLYGPATKKRLPVFSEFCPG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66810	C3HZnF	AtC3H14	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.005G176900 [exp]	0	1
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Potri.005G074700 [exp]	6.70	0.7385	POR.1,TFCFC
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Potri.016G071500 [exp]	9.48	0.6908	NHL1.1
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Potri.008G065800 [exp]	11.74	0.7453
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Potri.012G046300 [exp]	18.97	0.6613
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Potri.004G132300 [exp]	45.51	0.6914
AT5G22850			Eukaryotic aspartyl protease f...		Potri.009G001700 [exp]	55.74	0.7139
AT3G10910			RING/U-box superfamily protein...		Potri.016G136200 [exp]	58.09	0.6262
AT5G42090			Lung seven transmembrane recep...		Potri.001G083100 [exp]	60.66	0.6831
AT2G13100		AtG3Pp5	glycerol-3-phosphate permease ...		Potri.018G115000 [exp]	64.48	0.6328
AT3G24515		UBC37	ubiquitin-conjugating enzyme 3...		Potri.006G157600 [exp]	112.21	0.6751

Compare expression of checked genes

Potri.005G176900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.