Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77610 561 / 0 EamA-like transporter family protein (.1) AT1G21870 555 / 0 GONST5 golgi nucleotide sugar transporter 5 (.1) AT5G05820 172 / 5e-51 Nucleotide-sugar transporter family protein (.1) AT3G11320 168 / 9e-50 Nucleotide-sugar transporter family protein (.1) AT5G04160 165 / 2e-48 Nucleotide-sugar transporter family protein (.1) AT3G10290 158 / 3e-45 Nucleotide-sugar transporter family protein (.1) AT1G12500 152 / 4e-43 Nucleotide-sugar transporter family protein (.1) AT5G11230 105 / 1e-25 Nucleotide-sugar transporter family protein (.1) AT2G25520 103 / 7e-25 Drug/metabolite transporter superfamily protein (.1) AT4G32390 102 / 2e-24 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G084500 [exp] 606 / 0 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1) Potri.008G063400 [exp] 171 / 7e-51 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.016G043200 [exp] 169 / 5e-50 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.010G194100 [exp] 167 / 3e-49 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.003G118000 [exp] 163 / 3e-47 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.009G040800 [exp] 157 / 1e-45 AT5G05820 472 / 2e-169 Nucleotide-sugar transporter family protein (.1) Potri.001G247600 [exp] 155 / 7e-45 AT3G11320 476 / 4e-171 Nucleotide-sugar transporter family protein (.1) Potri.006G046600 [exp] 154 / 2e-44 AT5G04160 503 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G114100 [exp] 152 / 4e-43 AT1G12500 483 / 8e-172 Nucleotide-sugar transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042700 [exp] 572 / 0 AT1G77610 602 / 0.0 EamA-like transporter family protein (.1) Lus10025645 [exp] 555 / 0 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1) Lus10029663 [exp] 509 / 9e-180 AT1G77610 547 / 0.0 EamA-like transporter family protein (.1) Lus10018189 [exp] 405 / 1e-143 AT1G77610 417 / 1e-148 EamA-like transporter family protein (.1) Lus10016446 [exp] 171 / 8e-51 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10028255 [exp] 167 / 3e-49 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10040234 [exp] 167 / 4e-49 AT3G11320 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10009878 [exp] 162 / 3e-47 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018043 [exp] 149 / 3e-42 AT3G10290 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10042039 [exp] 149 / 6e-42 AT3G10290 526 / 0.0 Nucleotide-sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF08449 [poplar] [flax] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Potri.005G177200.1 pacid=42804988 polypeptide=Potri.005G177200.1.p locus=Potri.005G177200 ID=Potri.005G177200.1.v4.1 annot-version=v4.1 ATGGAGGAGAGTGTGATTTTTCAGTGGAGTGTGTTTAGATCTCTGCTCGCTATTCTCCAATGGTGGGGTTTCAATGTTACTGTTATTATCATGAACAAAT GGATCTTCCAGAAACTGGATTTCAAGTTTCCGCTAACAGTATCTTGCATCCATTTCATATGCTCATCCATTGGAGCATATGTGGTAATCAAGGTTCTGAA GATCAAACCATTGATAGTGGTTGAACCTGAAGATCGCTGGCGAAGGATATTTCCCATGTCGTTTGTGTTTTGCATCAACATAGTGCTGGGGAATGTGAGC TTACGATTCATTCCAGTTTCGTTTATGCAAACAATAAAGTCATTTACTCCTGCAACCACAGTTGTTTTACAGTGGCTAGTTTGGAGAAAATATTTTGACT GGCGAATTTGGGCTTCTTTGGTACCAATTGTTGGAGGAATCCTTCTAACATCAGTTACTGAGCTTAGTTTTAATATGTTCGGATTTTGTGCTGCCTTATT TGGATGTTTGGCCACTTCAACAAAGACTATTCTTGCAGAATCTCTGCTGCACGGATATAAATTTGACAGCATAAACACCGTGTACTACATGGCACCTCTT GCAACCATGATCTTGGGATTACCAGCAATCTTGGTTGAAGGTAGCGGGGTTATAAATTGGTTTTACACCCACGAAGCTGTCTGGTCTTCCCTCATCATCA TTTTAAGCTCTGGGCTGCTGGCCTTTTGTCTTAACTTCTCCATCTTTTATGTGATTCATTCCACAACTGCAGTAACATTTAATGTTGCTGGAAATCTTAA GGTTGCATTTGCTGTTCTAATTTCCTGGATGATATTCCGGAACCCGATATCTGTCATGAATGCTGTTGGATGTGCCATTACACTTGTAGGGTGTACATTC TATGGGTATGTGAGGCACTTGCTCTCCCAACAGCCTCCACCACCAGGAACTCCTCGAACACCCAAGACTCCGAGGAATCGGATGGAATTACTTCCCCTTG TAAATGACAAATTGGATGATAAGGTCTAA
AA sequence Show only first row Show all	>Potri.005G177200.1 pacid=42804988 polypeptide=Potri.005G177200.1.p locus=Potri.005G177200 ID=Potri.005G177200.1.v4.1 annot-version=v4.1 MEESVIFQWSVFRSLLAILQWWGFNVTVIIMNKWIFQKLDFKFPLTVSCIHFICSSIGAYVVIKVLKIKPLIVVEPEDRWRRIFPMSFVFCINIVLGNVS LRFIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAALFGCLATSTKTILAESLLHGYKFDSINTVYYMAPL ATMILGLPAILVEGSGVINWFYTHEAVWSSLIIILSSGLLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAFAVLISWMIFRNPISVMNAVGCAITLVGCTF YGYVRHLLSQQPPPPGTPRTPKTPRNRMELLPLVNDKLDDKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77610			EamA-like transporter family p...		Potri.005G177200 [exp]	0	1
AT2G22620			Rhamnogalacturonate lyase fami...		Potri.014G004500 [exp]	2.44	0.9618
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G123200 [exp]	3.16	0.9621	FLA14.13
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.013G014200 [exp]	5.29	0.9543	Pt-FLA14.16
AT4G34215			Domain of unknown function (DU...		Potri.014G022700 [exp]	7.00	0.9471
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.013G151500 [exp]	8.06	0.9508	Pt-FLA14.15
AT1G33720		CYP76C6	"cytochrome P450, family 76, s...		Potri.001G109300 [exp]	9.79	0.9474
AT5G15740		RRT1	O-fucosyltransferase family pr...		Potri.017G101300 [exp]	10.00	0.9380
AT2G20562			unknown protein		Potri.007G136800 [exp]	12.36	0.9382
AT3G47690		ATEB1A, ATEB1H2	ATEB1-HOMOLOG2, ARABIDOPSIS TH...		Potri.012G069400 [exp]	12.40	0.9319	Pt-ATEB1.3
AT3G51150			ATP binding microtubule motor ...		Potri.005G116900 [exp]	13.07	0.9166

Compare expression of checked genes

Potri.005G177200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.