Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08320 405 / 2e-139 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G42810 99 / 4e-22 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT4G12400 96 / 3e-21 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT3G17970 84 / 4e-17 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT1G12270 82 / 1e-16 Hop1 Hop1, stress-inducible protein, putative (.1) AT1G62740 80 / 8e-16 Hop2 Hop2, stress-inducible protein, putative (.1) AT5G09420 79 / 1e-15 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT4G30480 72 / 9e-14 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT1G56440 70 / 8e-13 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G42580 69 / 3e-12 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G113400 [exp] 96 / 4e-21 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.014G141800 [exp] 91 / 1e-19 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.001G119500 [exp] 91 / 2e-19 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.012G046900 [exp] 81 / 2e-16 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.015G038600 [exp] 76 / 1e-14 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.001G205300 [exp] 74 / 4e-14 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.005G014100 [exp] 69 / 1e-12 AT1G56440 476 / 1e-165 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G008400 [exp] 69 / 2e-12 AT1G56440 471 / 1e-163 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G178900 [exp] 66 / 6e-12 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018179 [exp] 437 / 3e-152 AT4G08320 389 / 9e-134 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10025656 [exp] 431 / 5e-150 AT4G08320 379 / 9e-130 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10028919 [exp] 94 / 2e-20 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10004336 [exp] 93 / 5e-20 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10032234 [exp] 91 / 2e-19 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10024597 [exp] 90 / 4e-19 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10009682 [exp] 82 / 2e-16 AT3G17970 700 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10042001 [exp] 77 / 8e-15 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10018004 [exp] 74 / 7e-14 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10041189 [exp] 67 / 6e-12 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.005G177400.1 pacid=42805301 polypeptide=Potri.005G177400.1.p locus=Potri.005G177400 ID=Potri.005G177400.1.v4.1 annot-version=v4.1 ATGGCTCAACTAAAAACTGATTCTGCTCTCTCCCGTCGTATCGCTCGTGCTTTCATCGATTTCCTCAACTCCGTGGAAGCTGCTCCCGGTGTTGACCTAG AAGGTCTGGAAGTTGCTAAAGAATGTGTGAGTGATGCTTTCAAGCTTGATTCACCAAATATTGATGATGATCGCTTAGAACCTGGTTTGTTGATTGATTT ATTTCGCTCACTGGAAGCAAATGGGCTGCAAAAGAATAAATCGGATCCTAGCAGCGGCACGGCTCCTGTGGATGCTCCTACTTCTTCTAATAATAATACT AATAATGATGGGTTATCTAGAGATGAGCTTTTTGGGCAATTCTTTGCTGCGCTTGAGAAAATGCACTTCTTTAGAACAACTCCTGATGGGAATGATGATC CTGCTCAACTTGATAGAGCGACACGGTTGTTTCATGATGCTTTAAATGAAATGGAAAAAAATGGATGCCATACCTATGGCCGCAACAGTCTAGCTGAGGC ATTAAAGTCACAAGGTAACAGGGCTGTGCAGTGTAAACTTTACTCTGATGCAATAGAGTTGTATTCTTGCGCCATTTCACTTTGTGAAAACAATGCTGTT TACTACTGTAACAGGGCAGCTGCCTACACTCAGATCCACAAATATACCGAAGCAATCAGAGATTGTCTTAAATCTGTCGAAATTGACCCAGGTTACAGTA AAGCTTACAGTCGCCTTGGATTAGCCTATTATGCACAAGGGAACTACAGGGATGCTATTGATAAAGGATTTAAGAAAGCCTTGCAACTGGACCCCAGTAA TGAAACGGTCAAAGAAAATATTCGGGTAGCTGAGCAGAAATTGATAGAACAGCAGAAACGAACAGAACAAGGCCAGAATTCTAGTTCATCCAATCGTGAT AATTATGAATCTAGCAATCAATCCACCGGAGGGTCTAGGAGCCATAGTATGCCAATGCAATTTGACATTAACGGCATTTCTGTTGACTTTTCAAGCATGT TGCGGAACATGACTGCTCACATGGGAGAGCAATCTCAGGACAGGCAAGGACAAGATGGGAGCGCTAATGGATCTGATGAACCTGAAATAATAATAGGTGG GAACATAGGTGTGAATATGACAGAAACTATGCCGGATGAACCCCACCTAGGTGTGAATATGACAGAAACTATGCCGGATGAACTAAGAGGAGCTTTCAGG TCAATGATGGAAATGTTCTCAGGGGCAGCTTCCCATGGAAATGCTCAAGATGCCATGAATGGAAGATCACCGACAAACTAA
AA sequence Show only first row Show all	>Potri.005G177400.1 pacid=42805301 polypeptide=Potri.005G177400.1.p locus=Potri.005G177400 ID=Potri.005G177400.1.v4.1 annot-version=v4.1 MAQLKTDSALSRRIARAFIDFLNSVEAAPGVDLEGLEVAKECVSDAFKLDSPNIDDDRLEPGLLIDLFRSLEANGLQKNKSDPSSGTAPVDAPTSSNNNT NNDGLSRDELFGQFFAALEKMHFFRTTPDGNDDPAQLDRATRLFHDALNEMEKNGCHTYGRNSLAEALKSQGNRAVQCKLYSDAIELYSCAISLCENNAV YYCNRAAAYTQIHKYTEAIRDCLKSVEIDPGYSKAYSRLGLAYYAQGNYRDAIDKGFKKALQLDPSNETVKENIRVAEQKLIEQQKRTEQGQNSSSSNRD NYESSNQSTGGSRSHSMPMQFDINGISVDFSSMLRNMTAHMGEQSQDRQGQDGSANGSDEPEIIIGGNIGVNMTETMPDEPHLGVNMTETMPDELRGAFR SMMEMFSGAASHGNAQDAMNGRSPTN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08320		TPR8	tetratricopeptide repeat 8, Te...		Potri.005G177400 [exp]	0	1
AT4G29810		MK1, ATMKK2	MAP KINASE KINASE 1, MAP kinas...		Potri.006G146500 [exp]	5.09	0.8148	Pt-MEK1.1
AT3G54290			unknown protein		Potri.010G239700 [exp]	8.66	0.7980
AT5G49840			ATP-dependent Clp protease (.1...		Potri.004G229400 [exp]	9.64	0.8446
AT5G20200			nucleoporin-related (.1)		Potri.018G129900 [exp]	12.00	0.8205
					Potri.012G100001 [exp]	12.84	0.8325
AT5G39450			F-box family protein (.1)		Potri.007G102000 [exp]	13.78	0.8093
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Potri.010G193000 [exp]	17.66	0.7856
AT2G32600			hydroxyproline-rich glycoprote...		Potri.016G097600 [exp]	17.77	0.8331
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.004G209000 [exp]	18.60	0.8378
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Potri.009G105600 [exp]	20.04	0.8275

Compare expression of checked genes

Potri.005G177400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.