Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21830 129 / 9e-38 unknown protein AT1G44608 75 / 7e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G083900 [exp] 317 / 2e-111 AT1G21830 145 / 1e-43 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025658 [exp] 142 / 7e-42 AT1G21830 63 / 7e-12 unknown protein Lus10018177 [exp] 132 / 4e-38 AT1G21830 115 / 1e-31 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05340 [poplar] [flax] DUF740 Protein of unknown function (DUF740)
Representative CDS sequence Show only first row Show all	>Potri.005G177600.1 pacid=42802645 polypeptide=Potri.005G177600.1.p locus=Potri.005G177600 ID=Potri.005G177600.1.v4.1 annot-version=v4.1 ATGAATGCCTATAGATCAGAAGACAATTCATACTGTTATTTCCATCCCAAAGAGGTTGTTGTTGGGGTTTGTCCACTATGCTTGAGTGAGAGGCTCCTCA TATTGGCTGCAAAGCAAGGCAACCTTTCTTCTGCTAGAGCAGCTCATAGAAATGAAGGCACAACACACAAAAAGCCACCCATCAACCTTCCAAAGATTTT CGCTCTTGGTTCTTTTCTAAATCGGCTTGAGTTTCGGAACTGGAAGTCTAATAACTCTGATCACGATGCTGAACCCACCAGTCAAGAAGACTCCTTTATA TCAATCAAGTTTGAAGACAATGGTGCTGCCTCATGGGAAAAGGGCACAGTTTCTAAGGTCTTCATCGATCCTTGTAGCCAGCCATGGAATCAAAATCTCA ACATGGAAGCCAAAGAAGGCAAAGACATTAAGGAGACCGTCAGTATGATAGAGCAGGTAAAACCGCGTTCCTCACTGAGGTGGCGAAGGGGGATTGGTCA TATGTTCCATCTAATCAGATGGAAGAGGTCCACCATGGTGGAGGGAGTCAAGGTGAGGAAGAGCTGGATAAGGACTCTGACAAAGAGGAGAACCATATAA
AA sequence Show only first row Show all	>Potri.005G177600.1 pacid=42802645 polypeptide=Potri.005G177600.1.p locus=Potri.005G177600 ID=Potri.005G177600.1.v4.1 annot-version=v4.1 MNAYRSEDNSYCYFHPKEVVVGVCPLCLSERLLILAAKQGNLSSARAAHRNEGTTHKKPPINLPKIFALGSFLNRLEFRNWKSNNSDHDAEPTSQEDSFI SIKFEDNGAASWEKGTVSKVFIDPCSQPWNQNLNMEAKEGKDIKETVSMIEQVKPRSSLRWRRGIGHMFHLIRWKRSTMVEGVKVRKSWIRTLTKRRTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21830			unknown protein		Potri.005G177600 [exp]	0	1
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.001G240400 [exp]	1.00	0.8885	Pt-APK1.2
AT4G34200		EDA9	embryo sac development arrest ...		Potri.002G122700 [exp]	1.73	0.8475
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Potri.010G145900 [exp]	2.23	0.8412
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Potri.007G112600 [exp]	5.91	0.8111
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.007G078100 [exp]	7.74	0.8458	Pt-BRI1.2
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.005G086500 [exp]	8.83	0.8566	Pt-BRI1.1
					Potri.007G119351 [exp]	9.48	0.7697
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Potri.005G179600 [exp]	12.48	0.8357
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.001G368000 [exp]	14.69	0.7752
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Potri.003G030900 [exp]	15.49	0.8007	Pt-NHO1.1

Compare expression of checked genes

Potri.005G177600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.