Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05270 355 / 2e-114 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G21810 279 / 3e-85 Plant protein of unknown function (DUF869) (.1) AT1G77580 279 / 3e-85 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT4G36120 143 / 2e-35 Plant protein of unknown function (DUF869) (.1) AT1G19835 138 / 7e-34 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G47900 133 / 3e-32 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT2G23360 88 / 9e-18 Plant protein of unknown function (DUF869) (.1) AT3G19370 45 / 0.0001 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2), Plant protein of unknown function (DUF869) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G083400 [exp] 887 / 0 AT3G05270 334 / 2e-105 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G070400 [exp] 480 / 5e-162 AT3G05270 308 / 6e-96 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.007G098500 [exp] 449 / 3e-150 AT3G05270 310 / 7e-97 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G024400 [exp] 141 / 1e-34 AT1G19835 941 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G237100 [exp] 140 / 2e-34 AT1G19835 869 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G140300 [exp] 112 / 2e-25 AT2G23360 551 / 0.0 Plant protein of unknown function (DUF869) (.1) Potri.007G046100 [exp] 106 / 2e-23 AT2G23360 549 / 3e-180 Plant protein of unknown function (DUF869) (.1) Potri.009G099500 [exp] 103 / 8e-23 AT2G23360 295 / 2e-86 Plant protein of unknown function (DUF869) (.1) Potri.001G304200 [exp] 93 / 2e-19 AT2G23360 279 / 2e-80 Plant protein of unknown function (DUF869) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018164 [exp] 551 / 0 AT1G77580 395 / 6e-129 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10025674 [exp] 532 / 0 AT1G77580 343 / 9e-109 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10000186 [exp] 493 / 4e-168 AT1G77580 333 / 4e-106 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10029679 [exp] 345 / 5e-109 AT1G77580 372 / 1e-119 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10042719 [exp] 342 / 8e-108 AT1G77580 386 / 5e-125 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012712 [exp] 181 / 7e-50 AT1G77580 233 / 1e-69 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10010888 [exp] 173 / 5e-47 AT1G77580 233 / 2e-69 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012431 [exp] 144 / 1e-35 AT1G19835 901 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10024324 [exp] 144 / 1e-35 AT1G19835 919 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10034509 [exp] 137 / 1e-34 AT1G19835 582 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05911 [poplar] [flax] FPP Filament-like plant protein, long coiled-coil
Representative CDS sequence Show only first row Show all	>Potri.005G178100.3 pacid=42804072 polypeptide=Potri.005G178100.3.p locus=Potri.005G178100 ID=Potri.005G178100.3.v4.1 annot-version=v4.1 ATGGAGAAGAGGAAATGGTTGTGGAAGAGGAAGTCTTCTGAGAGGAGTTCTGGTGAAACTGACAGTTCGGGATCAATAACTTCACATTCTGAGAGATTCT CTGATGATCAGCAGGATCCCTCAAAGGCATCTACAACTGACAGTGCTCAATCACCTGAAGTGACATCAAAAACTGTCACTAGGGATGAAGATGTCAATGA TAGCGATAAGAGTTTGACAGAGAAGTTATCAGCCGCTCTTGTCAATGTTAGTGCAAAAGATGACTTAGTAAAGCAGCATGCGAAAGTTGCTGAAGAAGCT GTTGCAGGCTGGGAAAAGGCTGAAAATGAAGTAATGGCTCTCAAGAAACAAATTGAAGTTGCAAATCAGCAGAAATCTGCATTGGAAGATCGGGTGAGCC ACCTTGATGGGGCCCTTAAAGATTGTGTTAGGCAGCTGAGACAAGCAAGAGAAGAGCAGGAAGAAAAGCTTCATGAAGCTGTGGTGCAGAAAAGTCTCGA GTGGGAATCCATTAAATCTGAACTTGAGAACCAGTTTATTGAGCTCAAGACAAAAGAAGCTGCTGCCAATTCTGAATCTCCTGCTCTGATTGTTGACGAA CTCTGCCAGAAGCTTGAATATTTGGAGCAAGAGAATGCTACCCTGAAAGTCGAGCTCCTTTCCCAGTCAGAAGAGTTAGAGGCCAGAACAGTTGAAAGGG ACTTGAGTACCCAAGCAGCTGAAACAGCCAGCAAACAACATCTGGAGAGCATAAAGAAGGTGGTCAGACTTGAAGCTGAGTGCCGGAGGCTAAAAGCCAT GGCTTGTAAATCATCCTCTGTTAATGATCACAAGACTTCTGCTGCATCCTCAGTTTATGTTGAGTCTTTCACTGACAGTCAATCAGACAGTGGCGAGAAA CTTAATGCTGTGGTGCTGGATGCTCGCAAAGTTAGTTGCTCAGGGCCATACAAGTCTGAACAAATTTGCTCAGACTCATGGGCATCTGCACTAATTTCAG AGGTTGACCAATTCAAGAATGAAAAGTCTATTAATCGAAATCTCCCAGCCTCACCCGTCGAAATTGATCTCATGGATGATTTTCTTGAAATGGAACGACT TGCTGCTTTGCCTGAGAATGAAGCTGGAACTGATAATTCTAGAGCAGAAGATGCTGCCAAACAATCAATTGATGCTGAAAGCTCGTTGAGAGCTGAGCGG GAATTCATAATAAAACGAAGCGCTGAATTGGAAGAGAAGTTACAGAAGATGGAAGAAGAAAAGTTTGTATTGGAAGAGAAATTAAGGAAGATGGAAGGGG AAACGTTTGTATTGGAAGAGAAGTTAGAAGAGATTAAAGCAGAGAGGGATGAGTTGGAGATGGCTCTAACAGAAAGTCAGGACAAGAATGAAGCATCACA ACTTCAGCTGAGGGAGGCCCAACAGAAGTTGGTGGAGTTGCAAGAAGAGCTATCAATGGCAAATGAATCAAAGCAGCAAATTGAATCTCGACTTGTTAGC ATGGAAGTGGAGGCTCGGACCATGTCTGCAAAAGTTAACTCGTTAGAAGGAGAGATTGAAAAGGAGAGGGTTTTGTCGACGGGAATTGCAGCCAAGTATC AGGAACTCGAGGAAAATCTCTCAAGAAAGAAACAGGAAGAAGAGCTCCAGCAAACTGTAAGCTCAAGTGTTGAACAACAAATAAAGCAGCAGGACCTAGA TGTCGCTGCAAAGAAACATGCTGAATGCCAGGAAACAATAGCTTCTCTAGGGAAGCAGCTGAAATCTCTAGCAACTCTAGAGGACTTCTTGATAGACACT GCAAGCATACCGGAGTTCTCTGCTGGAGGATCAGCAATTCCTAAGGTAATGGAGAACCTTGGAAGTGACACTCCAATGAAACGTTTTCACCTAAGAGAGA TTCCAGTTCTATGA
AA sequence Show only first row Show all	>Potri.005G178100.3 pacid=42804072 polypeptide=Potri.005G178100.3.p locus=Potri.005G178100 ID=Potri.005G178100.3.v4.1 annot-version=v4.1 MEKRKWLWKRKSSERSSGETDSSGSITSHSERFSDDQQDPSKASTTDSAQSPEVTSKTVTRDEDVNDSDKSLTEKLSAALVNVSAKDDLVKQHAKVAEEA VAGWEKAENEVMALKKQIEVANQQKSALEDRVSHLDGALKDCVRQLRQAREEQEEKLHEAVVQKSLEWESIKSELENQFIELKTKEAAANSESPALIVDE LCQKLEYLEQENATLKVELLSQSEELEARTVERDLSTQAAETASKQHLESIKKVVRLEAECRRLKAMACKSSSVNDHKTSAASSVYVESFTDSQSDSGEK LNAVVLDARKVSCSGPYKSEQICSDSWASALISEVDQFKNEKSINRNLPASPVEIDLMDDFLEMERLAALPENEAGTDNSRAEDAAKQSIDAESSLRAER EFIIKRSAELEEKLQKMEEEKFVLEEKLRKMEGETFVLEEKLEEIKAERDELEMALTESQDKNEASQLQLREAQQKLVELQEELSMANESKQQIESRLVS MEVEARTMSAKVNSLEGEIEKERVLSTGIAAKYQELEENLSRKKQEEELQQTVSSSVEQQIKQQDLDVAAKKHAECQETIASLGKQLKSLATLEDFLIDT ASIPEFSAGGSAIPKVMENLGSDTPMKRFHLREIPVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05270			Plant protein of unknown funct...		Potri.005G178100 [exp]	0	1
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Potri.008G002900 [exp]	8.66	0.9544	SHMT2,SHM1.2
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Potri.005G112900 [exp]	9.38	0.9520
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Potri.014G085700 [exp]	13.52	0.9485	ANTR2.2
AT3G28910	MYB	AtMYB30, MYB30	myb domain protein 30 (.1)		Potri.004G126700 [exp]	18.76	0.9359
AT1G53230	TCP	TCP3	TEOSINTE BRANCHED 1, cycloidea...		Potri.001G375800 [exp]	22.20	0.9373
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Potri.001G237800 [exp]	23.40	0.9469	ALB3.2
AT3G05350			Metallopeptidase M24 family pr...		Potri.013G021400 [exp]	23.74	0.9448
AT5G04900		NOL	NYC1-like (.1)		Potri.008G014200 [exp]	25.29	0.9424
AT3G05625			Tetratricopeptide repeat (TPR)...		Potri.013G012400 [exp]	25.45	0.9421
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.008G022200 [exp]	26.98	0.9399

Compare expression of checked genes

Potri.005G178100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.