Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44446 843 / 0 ATCAO, CH1 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) AT2G24820 91 / 4e-19 AtTic55, TIC55-II, TIC55 translocon at the inner envelope membrane of chloroplasts 55-II (.1) AT3G44880 60 / 3e-09 PAO, LLS1, ACD1 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) AT4G25650 53 / 3e-07 TIC55-IV, PTC52, ACD1-LIKE TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) AT4G29890 42 / 0.001 choline monooxygenase, putative (CMO-like) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G083200 [exp] 1001 / 0 AT1G44446 799 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) Potri.018G015700 [exp] 94 / 3e-20 AT2G24820 778 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Potri.006G267300 [exp] 92 / 1e-19 AT2G24820 745 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Potri.003G219550 [exp] 63 / 2e-10 AT4G25650 664 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219000 [exp] 59 / 4e-09 AT4G25650 667 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219400 [exp] 59 / 5e-09 AT4G25650 672 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.001G005700 [exp] 59 / 7e-09 AT4G25650 634 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G218900 [exp] 58 / 1e-08 AT4G25650 639 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.004G217200 [exp] 52 / 6e-07 AT3G44880 758 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029678 [exp] 909 / 0 AT1G44446 859 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) Lus10000218 [exp] 907 / 0 AT1G44446 858 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) Lus10000214 [exp] 905 / 0 AT1G44446 856 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) Lus10042718 [exp] 873 / 0 AT1G44446 844 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) Lus10026246 [exp] 99 / 1e-21 AT2G24820 692 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Lus10042424 [exp] 97 / 3e-21 AT2G24820 692 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Lus10025414 [exp] 81 / 1e-15 AT4G25650 592 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015284 [exp] 66 / 5e-11 AT4G25650 537 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10033784 [exp] 63 / 5e-10 AT4G33820 480 / 2e-160 Glycosyl hydrolase superfamily protein (.1) Lus10015283 [exp] 61 / 2e-09 AT4G25650 621 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0516 [poplar] [flax] ISP-domain PF00355 [poplar] [flax] Rieske Rieske [2Fe-2S] domain CL0209 [poplar] [flax] Bet_v_1_like PF08417 [poplar] [flax] PaO Pheophorbide a oxygenase
Representative CDS sequence Show only first row Show all	>Potri.005G178300.1 pacid=42804043 polypeptide=Potri.005G178300.1.p locus=Potri.005G178300 ID=Potri.005G178300.1.v4.1 annot-version=v4.1 ATGACCGCCTTTGCTACTGCTGCAGCTCTCTCTGTGCCCATTTCTCTATGTAGATCATCTAAGCTCAACTGTAAAAAGGGCGTTAGAGGAGGGTTTAGGG TGTTTGCAGTATTAGGGGAGGAAGGCGGGTTGTTAGATAAGAAGAGTACATGGGGTCCACTCTTTGATGTGGAGGATCCGAGGTCTAAGATGCCACAGTT TAAAGGGAAGTTCTTGGATGCTTATCAAGCACTTGAAGTGGCAAGATATGATATTCAGTACTGTGATTGGCGAGCTCGGCAAGATCTACTTACTATCGTG ATCCTTCATGAAAAGGTTGTGGAAGTTCTAAATCCCTTAGCTCGTGATTACAAGTCTATTGGCACCATGAAGAAGGAGCTTGCGGAGTTGCAAGATGAGT TATCCCAAGCTCACAGACAGGTTCATATATCTGAAGCAAGGGTTTCTACTGCCTTAGATAAACTAGCTTACATGGAAGAATTGGTCAATGATAGGCTGTT ACAAGACAGGAACCCAGCAGAGTCTGACCAAGCATCCCCTTCTCCCAGCACTTCAACTCAATCTCTGGATACTGTAAAAAACAAGTCACCCCGGAAAAAC TTGAAAGTGTCAGGTCCAGTTCAACCTTACCATCCTCACCTGAAGAATTTCTGGTATCCTGTTGCTTTCTCCACTGATCTGAAGGATGGCACCATGATTC CAATTGATTGTTTTGAGGAACCATGGGTTCTCTTTCGTGGCATGGATGGGAAACCAGGATGTGTCCGGAACACCTGTGCACACAGAGCATGTCCACTTCA CCTTGGTTCAGTGAATGAGGGTCGAGTCCGATGTCCTTACCATGGGTGGGAATATTCAACAGATGGAAAATGTGAGAAAATGCCTTCCACACGATTACTT AATGTGAAGATAAAATCATTGCCATGTTTTGAGCAAGAAGGTATGATTTTGGTTTGGCCTGGCAGCGACCCTCCTGCAGCAACCCTTCCTTCATTACAAC CTCCTCCAGGTTTTCAAGTCCATGCTGAGATTGTGATGGAACTTCCCGTGGAACATGGCCTACTTCTGGATAACCTCTTAGATCTTGCGCATGCCCCTTT TACTCACACATCAACCTTTGCCAAGGGGTGGAGCGTTCCCAGCTTGGTGAAATTTTTAACGCCTGCATCTGGCCTCCAAGGGTATTGGGACCCATATCCC ATAGATATGGAATTTCGACCACCTTGCATGGTGCTATCGACCATTGGGATCTCAAAGCCTGGAAAACTAGAGGGACAAAGCACCAGAGAGTGTGCAACTC ACCTCCACCAACTTCATGTTTGCTTGCCTTCCTCGAGACACAAGACTAGGTTATTGTACAGAATGTCACTGGATTTTGCTCCTGTGCTGAAGCATGTTCC TTTCATGCATTACCTATGGAGACATTTTGCTGAACAGGTGTTGAATGAGGATCTACGCCTTGTCCTCGGCCAGCAAGAGCGAATGATCAACGGTGCCAAT GTGTGGAATTGGCCAGTATCCTATGATAAACTAGGAGTAAGATATAGATTGTGGAGAGATGCTGTTGAAAAAGGAGCAAAGCAATTACCCTTCGAAAAAT CAACGTAA
AA sequence Show only first row Show all	>Potri.005G178300.1 pacid=42804043 polypeptide=Potri.005G178300.1.p locus=Potri.005G178300 ID=Potri.005G178300.1.v4.1 annot-version=v4.1 MTAFATAAALSVPISLCRSSKLNCKKGVRGGFRVFAVLGEEGGLLDKKSTWGPLFDVEDPRSKMPQFKGKFLDAYQALEVARYDIQYCDWRARQDLLTIV ILHEKVVEVLNPLARDYKSIGTMKKELAELQDELSQAHRQVHISEARVSTALDKLAYMEELVNDRLLQDRNPAESDQASPSPSTSTQSLDTVKNKSPRKN LKVSGPVQPYHPHLKNFWYPVAFSTDLKDGTMIPIDCFEEPWVLFRGMDGKPGCVRNTCAHRACPLHLGSVNEGRVRCPYHGWEYSTDGKCEKMPSTRLL NVKIKSLPCFEQEGMILVWPGSDPPAATLPSLQPPPGFQVHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYP IDMEFRPPCMVLSTIGISKPGKLEGQSTRECATHLHQLHVCLPSSRHKTRLLYRMSLDFAPVLKHVPFMHYLWRHFAEQVLNEDLRLVLGQQERMINGAN VWNWPVSYDKLGVRYRLWRDAVEKGAKQLPFEKST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Potri.005G178300 [exp]	0	1
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Potri.014G075200 [exp]	2.23	0.9425	Pt-ANL2.2
AT5G56850			unknown protein		Potri.006G151100 [exp]	2.82	0.9280
AT3G06880			Transducin/WD40 repeat-like su...		Potri.015G117300 [exp]	7.74	0.9345
AT5G53580		AtPLR1	pyridoxal reductase 1, NAD(P)-...		Potri.015G006900 [exp]	9.16	0.9310
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Potri.006G051100 [exp]	10.09	0.9399	Pt-GUN5.1
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Potri.001G279100 [exp]	10.39	0.9293	F2KP.3
AT5G23980		FRO2, ATFRO4, F...	ferric reduction oxidase 4 (.1...		Potri.004G079200 [exp]	11.18	0.8844	Pt-FRO2.2
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Potri.004G095800 [exp]	11.83	0.9303
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Potri.018G013800 [exp]	15.68	0.8953	Pt-COL1.2
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Potri.007G082500 [exp]	15.81	0.9236

Compare expression of checked genes

Potri.005G178300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.