Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21780 543 / 0 BTB/POZ domain-containing protein (.1.2) AT1G55760 351 / 4e-121 BTB/POZ domain-containing protein (.1) AT2G39760 73 / 3e-14 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT3G06190 67 / 3e-12 ATBPM2 BTB-POZ and MATH domain 2 (.1.2) AT1G01640 61 / 1e-10 BTB/POZ domain-containing protein (.1.2) AT3G56230 60 / 5e-10 BTB/POZ domain-containing protein (.1) AT2G30600 60 / 1e-09 BTB/POZ domain-containing protein (.1.2.3.4.5) AT3G03740 57 / 7e-09 ATBPM4 BTB-POZ and MATH domain 4 (.1) AT5G19000 56 / 1e-08 ATBPM1 BTB-POZ and MATH domain 1 (.1.2) AT4G04090 54 / 2e-08 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G082800 [exp] 615 / 0 AT1G21780 535 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.001G468700 [exp] 367 / 2e-127 AT1G55760 522 / 0.0 BTB/POZ domain-containing protein (.1) Potri.013G083800 [exp] 62 / 8e-11 AT3G56230 305 / 2e-104 BTB/POZ domain-containing protein (.1) Potri.010G029500 [exp] 60 / 6e-10 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.008G200700 [exp] 59 / 2e-09 AT3G06190 582 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.002G077000 [exp] 56 / 6e-09 AT4G08455 369 / 2e-130 BTB/POZ domain-containing protein (.1) Potri.005G183600 [exp] 55 / 2e-08 AT4G08455 342 / 2e-119 BTB/POZ domain-containing protein (.1) Potri.004G194200 [exp] 54 / 7e-08 AT3G03740 573 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.009G156500 [exp] 53 / 1e-07 AT3G03740 580 / 0.0 BTB-POZ and MATH domain 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042717 [exp] 586 / 0 AT1G21780 557 / 0.0 BTB/POZ domain-containing protein (.1.2) Lus10029677 [exp] 566 / 0 AT1G21780 538 / 0.0 BTB/POZ domain-containing protein (.1.2) Lus10008348 [exp] 370 / 2e-128 AT1G55760 516 / 0.0 BTB/POZ domain-containing protein (.1) Lus10027101 [exp] 285 / 6e-95 AT1G55760 389 / 3e-136 BTB/POZ domain-containing protein (.1) Lus10029732 [exp] 59 / 7e-10 AT4G08455 354 / 2e-124 BTB/POZ domain-containing protein (.1) Lus10042763 [exp] 59 / 7e-10 AT4G08455 354 / 1e-124 BTB/POZ domain-containing protein (.1) Lus10021946 [exp] 59 / 2e-09 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10041235 [exp] 57 / 2e-09 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10022039 [exp] 58 / 4e-09 AT5G13060 821 / 0.0 ARMADILLO BTB protein 1 (.1) Lus10042583 [exp] 57 / 7e-09 AT5G19330 822 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Potri.005G178400.1 pacid=42803294 polypeptide=Potri.005G178400.1.p locus=Potri.005G178400 ID=Potri.005G178400.1.v4.1 annot-version=v4.1 ATGGCGGATTCAAAGGTAGAGACCATCTCCCGACTAGCCCAGTGGAGGATCGACAACTTTGGCCCTTCCTCTTACAAAAAATCCGATCCTTTCAAGGTCG GAATCTGGAACTGGTACTTGTCAATAGAGAAGAATCGGTACCTGTGCATTCGTTTATTTCCAGAGCCGTCTCGAGCTTCCAAAGAACAGCCTCCTATCGC TAGATTTGTTCTCCGCATCTCAAATGCTAGTGCTAATAATCGCAGGCCCCTTATCTCTCCAGTTCATGAGAGATTGCTCCGGACTAGTGAGGACTTTGTC TGGTCTGTTGATTCTACCTTTCATGGTCGCTTCATCATTGATGTTGAGTTTCTAGACCTCAAAATCTGCCCTCTGAATGGTGGGGAACCCAGTTCCACAT GGCCAAGTGATGGAATGATGCAGTCTGTTTCAACTCAAGGCACACTTCAATGTCTCTCTCGCATGCTGGATGAGGCCATCCATGCTGACGTTACTATCCA TACTGCTGAGGGAACTCTCAGTGCTCACAAGGCAATTCTTTCTGCAAGTTCGCCTGTTTTCCAGAGCATGTTCCATCACAACCTCAAGGAAAAAGAGTCC TCCACAATCTACATACAAGATATGACACTGGAATCTTGCATGACTCTCTTGAGTTACTTGTATGGAACCATCAAGCAAGAGGATTTTTGGAAGCACCGTG TATCACTGCTGGGGGCAGCAAACAAATATGATATTGCAGCCCTCAAGGATGCTTGTGAAGAAAGCCTCTTGGAAGATATTAATACCATGAATGTCCTTGA GAGGCTGCAAGAGGCCTGGCTTTACCAGTTGAACAAGTTGAAGAAAGGATGTATGATTTACTTGTTTGACTTTGGAAAAATATATGATGTTAGAGATGAG ATCAGCAACTTTTTAAGGCAGGCCGACAGGGAATTGATGGTAGAAATGTTTCAAGAGGTTATTACAGTTTGGAAACCTGTATAA
AA sequence Show only first row Show all	>Potri.005G178400.1 pacid=42803294 polypeptide=Potri.005G178400.1.p locus=Potri.005G178400 ID=Potri.005G178400.1.v4.1 annot-version=v4.1 MADSKVETISRLAQWRIDNFGPSSYKKSDPFKVGIWNWYLSIEKNRYLCIRLFPEPSRASKEQPPIARFVLRISNASANNRRPLISPVHERLLRTSEDFV WSVDSTFHGRFIIDVEFLDLKICPLNGGEPSSTWPSDGMMQSVSTQGTLQCLSRMLDEAIHADVTIHTAEGTLSAHKAILSASSPVFQSMFHHNLKEKES STIYIQDMTLESCMTLLSYLYGTIKQEDFWKHRVSLLGAANKYDIAALKDACEESLLEDINTMNVLERLQEAWLYQLNKLKKGCMIYLFDFGKIYDVRDE ISNFLRQADRELMVEMFQEVITVWKPV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21780			BTB/POZ domain-containing prot...		Potri.005G178400 [exp]	0	1
AT5G09630			LisH/CRA/RING-U-box domains-co...		Potri.001G286300 [exp]	3.00	0.7976
AT4G12230			alpha/beta-Hydrolases superfam...		Potri.001G118000 [exp]	4.00	0.7477
AT4G22910		CCS52A1, FZR2	cell cycle switch protein 52 ...		Potri.001G112700 [exp]	6.08	0.6396
AT2G23090			Uncharacterised protein family...		Potri.001G296600 [exp]	6.32	0.7620
AT1G61065			Protein of unknown function (D...		Potri.004G038700 [exp]	7.74	0.7467
AT2G35320		ATEYA	EYES ABSENT homolog (.1)		Potri.001G144000 [exp]	9.00	0.7601
AT5G03970			F-box associated ubiquitinatio...		Potri.019G013900 [exp]	11.31	0.7158
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.018G023600 [exp]	17.14	0.7277
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Potri.004G190600 [exp]	20.00	0.6192
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Potri.017G032000 [exp]	23.49	0.6704

Compare expression of checked genes

Potri.005G178400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.