Plant FIBer expression Database

Potri.005G178600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G21760 479 / 6e-172 ATFBP7 F-box protein 7 (.1)
AT4G33210 42 / 0.0005 SLOMO SLOW MOTION, F-box family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G082500
[exp]
603 / 0 AT1G21760 474 / 7e-170 F-box protein 7 (.1)
Potri.006G220900
[exp]
46 / 2e-05 AT4G33210 1183 / 0.0 SLOW MOTION, F-box family protein (.1)
Potri.004G119500
[exp]
44 / 5e-05 AT5G39250 347 / 8e-122 F-box family protein (.1)
Potri.014G022100
[exp]
43 / 0.0001 AT4G24210 182 / 1e-59 SLEEPY1, F-box family protein (.1)
Potri.002G122300
[exp]
42 / 0.0001 AT4G24210 185 / 2e-60 SLEEPY1, F-box family protein (.1)
Potri.017G092800
[exp]
42 / 0.0004 AT5G39250 334 / 7e-117 F-box family protein (.1)
Potri.018G048700
[exp]
41 / 0.001 AT4G33210 1204 / 0.0 SLOW MOTION, F-box family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042716
[exp]
521 / 0 AT1G69740 644 / 0.0 Aldolase superfamily protein (.1.2)
Lus10029676
[exp]
481 / 1e-170 AT1G21760 444 / 5e-156 F-box protein 7 (.1)
Lus10026472
[exp]
45 / 9e-05 AT4G33210 1225 / 0.0 SLOW MOTION, F-box family protein (.1)
Lus10038067
[exp]
44 / 0.0001 AT4G33210 1215 / 0.0 SLOW MOTION, F-box family protein (.1)
Lus10042637
[exp]
41 / 0.0004 AT4G24210 186 / 6e-61 SLEEPY1, F-box family protein (.1)
Lus10032969
[exp]
41 / 0.0007 AT5G39250 351 / 1e-123 F-box family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF12937 F-box-like F-box-like
Representative CDS sequence
>Potri.005G178600.1 pacid=42805315 polypeptide=Potri.005G178600.1.p locus=Potri.005G178600 ID=Potri.005G178600.1.v4.1 annot-version=v4.1
ATGACTTCAGATTATGCACTACAAGTGCCTGATGAGCTGGAGACAGCTCTGCAGTTGAAGACGGTGCAGTACTTGGTTGCACAGAGACCATGGCTTGATC
TTTATGGAGTTAATGTTCGACCTGTTGCACCATATGGAAGTGTAGTTAGAATGGTAAATGTTGATCCAGCGTTGATACACCGTTGCTTGCCTGACGAGCT
GCTCTTTGAGGTATTTTCACGTATGGCTCCATATGATTTGGGAAGGGCAGCTTGTGTTTGTCGAAAATGGAGATACACTCTTCGTAACCCCATATTTTGG
CGCAATGCTTGCTTAAAGGCATGGCAGCTGTCTGGAATGGTTGAGAATTATAAAATTTTGCAATCAAAGTATGAGAGCTCGTGGAGGAAAATGTGGCTTC
TGAGGCCAAGGATCCGTACTGATGGTCTCTATGTCAGCAGGAACACCTATATTCGTGCTGGTGTGCGAGAGTGGACCGTCACCAATCCAGTTCACTTGGT
TTGCTATTACCGTTACATGAGATTTTTTCCTTCTGGCAGGTTCCTTTACAAAACTTCTGGTCAAGCAGTAAAAGATGTTGTGAAATGCATGAATTTTCGT
GCTTCAAAAACTGATGTTTTTATTGGCCGTCACACTCTGACAGATGACGAGGTTGAAGCCGCTTTCATGTACCCTGGCTTGCGTCCCACCATGTGGAGAG
CCTGCTTGAGGTTGAGAGGAACAACATTAGGTGCTAACAATAGGATGGATATACTCTCACTTTCTACAAGTAAAGTCAACAGTGATGGTGTAATTGAGCC
TGAGGAGGACATTCTTGGACGAGTTGAGTGGCAGGAGGATGATATTTCACGGGTATCTCACAATAGGGGTCTTGCTCCTTTCACATTTGTTCCATTTGAA
GAGGTGGAAACATCAGTCTTGAACCTGCCTGTGGAAAAGATGGATTATTATGTACCTGGGTAG
AA sequence
>Potri.005G178600.1 pacid=42805315 polypeptide=Potri.005G178600.1.p locus=Potri.005G178600 ID=Potri.005G178600.1.v4.1 annot-version=v4.1
MTSDYALQVPDELETALQLKTVQYLVAQRPWLDLYGVNVRPVAPYGSVVRMVNVDPALIHRCLPDELLFEVFSRMAPYDLGRAACVCRKWRYTLRNPIFW
RNACLKAWQLSGMVENYKILQSKYESSWRKMWLLRPRIRTDGLYVSRNTYIRAGVREWTVTNPVHLVCYYRYMRFFPSGRFLYKTSGQAVKDVVKCMNFR
ASKTDVFIGRHTLTDDEVEAAFMYPGLRPTMWRACLRLRGTTLGANNRMDILSLSTSKVNSDGVIEPEEDILGRVEWQEDDISRVSHNRGLAPFTFVPFE
EVETSVLNLPVEKMDYYVPG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G21760 ATFBP7 F-box protein 7 (.1) Potri.005G178600
[exp]
0 1
AT3G48330 ATPIMT1, PIMT1 Arabidopsis thaliana protein-l... Potri.012G090300
[exp]
2.82 0.7997
AT4G14385 unknown protein Potri.005G223900
[exp]
3.16 0.7991
AT3G52030 F-box family protein with WD40... Potri.009G056500
[exp]
5.19 0.6811
AT5G56140 RNA-binding KH domain-containi... Potri.011G168000
[exp]
5.29 0.7391
AT4G02080 ASAR1, ATSARA1C... secretion-associated RAS super... Potri.005G019100
[exp]
7.34 0.7412
AT5G54540 Uncharacterised conserved prot... Potri.011G130000
[exp]
10.81 0.7028
AT4G39100 SHL1 short life, PHD finger family ... Potri.004G159900
[exp]
14.31 0.7360
AT2G34450 HMG-box (high mobility group) ... Potri.004G131400
[exp]
16.61 0.6381
AT3G10915 Reticulon family protein (.1.2... Potri.019G057400
[exp]
18.16 0.7107
AT3G26420 ATRZ-1A RZ-1A, RNA-binding (RRM/RBD/RN... Potri.001G207100
[exp]
22.09 0.6414

Potri.005G178600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.