Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44350 603 / 0 ILL6 IAA-leucine resistant (ILR)-like gene 6 (.1) AT1G51760 474 / 3e-165 JR3, IAR3 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) AT5G56660 459 / 3e-159 ILL2 IAA-leucine resistant (ILR)-like 2 (.1) AT3G02875 444 / 3e-153 ILR1 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) AT1G51780 442 / 1e-152 ILL5 IAA-leucine resistant (ILR)-like gene 5 (.1) AT5G56650 439 / 3e-151 ILL1 IAA-leucine resistant (ILR)-like 1 (.1) AT5G54140 410 / 3e-140 ILL3 IAA-leucine-resistant (ILR1)-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G082400 [exp] 811 / 0 AT1G44350 609 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.010G035900 [exp] 498 / 2e-174 AT1G51760 482 / 1e-168 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.003G045200 [exp] 494 / 4e-173 AT1G51760 680 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.012G007400 [exp] 449 / 3e-155 AT5G54140 548 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.006G207400 [exp] 441 / 3e-152 AT3G02875 584 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.015G004000 [exp] 440 / 1e-151 AT5G54140 520 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.016G074100 [exp] 437 / 3e-150 AT3G02875 508 / 1e-178 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.006G207300 [exp] 423 / 5e-145 AT3G02875 568 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.003G091100 [exp] 44 / 0.0003 AT4G17830 734 / 0.0 Peptidase M20/M25/M40 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025668 [exp] 676 / 0 AT1G44350 585 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Lus10030659 [exp] 502 / 3e-176 AT1G51760 489 / 8e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030828 [exp] 501 / 1e-175 AT1G51760 489 / 6e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10018169 [exp] 485 / 3e-171 AT1G44350 423 / 3e-147 IAA-leucine resistant (ILR)-like gene 6 (.1) Lus10037601 [exp] 486 / 1e-169 AT1G51760 649 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10010715 [exp] 485 / 3e-169 AT1G51760 463 / 1e-161 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10029200 [exp] 478 / 1e-166 AT5G56660 469 / 8e-164 IAA-leucine resistant (ILR)-like 2 (.1) Lus10032963 [exp] 431 / 2e-148 AT5G54140 545 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Lus10016998 [exp] 432 / 3e-148 AT3G02875 571 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10006864 [exp] 426 / 1e-146 AT1G51760 586 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [poplar] [flax] Peptidase_MH PF01546 [poplar] [flax] Peptidase_M20 Peptidase family M20/M25/M40 CL0035 [poplar] [flax] PF07687 [poplar] [flax] M20_dimer Peptidase dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.005G178900.2 pacid=42804944 polypeptide=Potri.005G178900.2.p locus=Potri.005G178900 ID=Potri.005G178900.2.v4.1 annot-version=v4.1 ATGAATTCTCTCAAAATTCTCTCAGTACTCTTTCTCTCACTTGTAATCTCTTTTAGCTCTATCATCTCATCACCATCCTCTTCTCCTTCAACAACAAGCA CAAGCACAAGCCCAATCACATGTAATAATAATAATAATTATTATAATTATGATGGTGACTATTCATATTCGTGTTTTGACGGTACCTTAAGCAGTGTTAA TTCCTTGAATTCCAAGCCAAAAAACCAATCAAAACCCACAAAGGGAAAACCGTCGTCACCCAGCTGTGAGGTGTGGACCAAGACCTGCTCGGAGGCTGTT TTGGCCCTGGCACGGCAGCCAGAGACGGTTACATGGTTAAAGAGCGTGAGGAGGAAGATTCACGAGAATCCTGAGCTTGCTTTTGAAGAAGTCAAAACAA GCGAGCTAGTTAGAGATGAGTTGGATAGGATGGGGATTGAATATAGGTATCCTTTAGCTCAAACGGGTATTCGGGCTTGGATCGGCACGGGTGGACCTCC CTTTGTGGCTGTTCGAGCTGATATGGATGCTCTGCCAATTCAGGAAGCTGTAGAATGGGAGCATAAAAGCAAAGTGGCCGGCAAAATGCATGCTTGTGGG CATGATGCTCATGTCGCAATGCTGATGGGTGCTGCCAAGATTCTGAAGAGCCGCGAACATCTCTTGAAGGGAACTGTAATACTGCTCTTTCAGCCGGCAG AGGAAGCGGGGAATGGAGCAAAACGGATGATAGGAGATGGGGCTCTAGAGGAAGTGGAAGCTATATTTGCAGTTCATGTATCCCATGAGCATCCTACTGC CATCATTGGTTCAAGGCCTGGTCCTTTGCTTGCTGGATGCGGCTTCTTCAGAGCAGTAATTAATGGCAAAATGGGCCGTGCTGGCACCCCTCACCACTCT GTTGACCCCATTCTGGCTGCCTCTGCAGCTGTAATCAGCTTACAGGGCATTGTGTCTCGTGAAGCAAATCCGTTGGACTCTCAGGTAGTGTCTGTTACCA CAATGGATGGAGGCAATGATCTGGACATGATTCCAGACACCGTTATACTCGGTGGCACTTTCAGGGCTTTCTCCAACACAAGCTTTAATCAACTTCTTCA AAGAATCGAAGAGGTGATCGTTGAACAGGCTTCTGTTTTCAGATGCTCAGCAACAGTAGACTTCTTTGAAAATCAGTCCACAGTATATCCCCCGACCGTG AATGATGATCATATGTATGAGCATGTGAGGAAGGTGGCAATTGATTTGTTGGGTCCAGCGAACTTCAGGGTGGTACCACCAATGATGGGTGCCGAGGACT TCTCGTTTTACACTCAAGTGGTCCCTGCAGCTTTCTATTACATAGGCGTGAGGAACGAGACATTGGGGTCAACACACACGGGTCATTCACCATATTTCAT GATAGATGAAGATGTTCTTCCCATAGGCGCTGCAACTCATGCAACTATTGCTGAAAGATATCTCATTGAGCATGGTTGA
AA sequence Show only first row Show all	>Potri.005G178900.2 pacid=42804944 polypeptide=Potri.005G178900.2.p locus=Potri.005G178900 ID=Potri.005G178900.2.v4.1 annot-version=v4.1 MNSLKILSVLFLSLVISFSSIISSPSSSPSTTSTSTSPITCNNNNNYYNYDGDYSYSCFDGTLSSVNSLNSKPKNQSKPTKGKPSSPSCEVWTKTCSEAV LALARQPETVTWLKSVRRKIHENPELAFEEVKTSELVRDELDRMGIEYRYPLAQTGIRAWIGTGGPPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACG HDAHVAMLMGAAKILKSREHLLKGTVILLFQPAEEAGNGAKRMIGDGALEEVEAIFAVHVSHEHPTAIIGSRPGPLLAGCGFFRAVINGKMGRAGTPHHS VDPILAASAAVISLQGIVSREANPLDSQVVSVTTMDGGNDLDMIPDTVILGGTFRAFSNTSFNQLLQRIEEVIVEQASVFRCSATVDFFENQSTVYPPTV NDDHMYEHVRKVAIDLLGPANFRVVPPMMGAEDFSFYTQVVPAAFYYIGVRNETLGSTHTGHSPYFMIDEDVLPIGAATHATIAERYLIEHG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Potri.005G178900 [exp]	0	1
AT1G35830			VQ motif-containing protein (....		Potri.002G094900 [exp]	1.73	0.8561
AT3G18930			RING/U-box superfamily protein...		Potri.009G110000 [exp]	2.82	0.8211
AT4G17900			PLATZ transcription factor fam...		Potri.019G051200 [exp]	5.74	0.8132
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Potri.001G258600 [exp]	8.94	0.7700
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Potri.013G123100 [exp]	13.56	0.8092
AT3G26932		DRB3	dsRNA-binding protein 3 (.1.2)		Potri.005G045700 [exp]	14.31	0.7980
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.016G034400 [exp]	18.24	0.7639
AT1G01840			unknown protein		Potri.014G077000 [exp]	23.91	0.7360
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Potri.013G155100 [exp]	24.97	0.7318
					Potri.004G044750 [exp]	26.38	0.7533

Compare expression of checked genes

Potri.005G178900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.