Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PDI.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21750 681 / 0 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT1G77510 674 / 0 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT5G60640 229 / 9e-69 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT3G54960 209 / 5e-61 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT1G52260 148 / 6e-39 ATPDI3, ATPDIL1-5 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) AT3G16110 143 / 6e-37 ATPDI4, ATPDIL1-6 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) AT1G35620 111 / 2e-26 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) AT2G47470 95 / 7e-22 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G04980 96 / 3e-21 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT2G32920 87 / 4e-18 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G082100 [exp] 870 / 0 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.009G013600 [exp] 250 / 4e-76 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.001G183500 [exp] 157 / 8e-42 AT3G16110 650 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) Potri.008G040100 [exp] 112 / 1e-26 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.019G082400 [exp] 110 / 6e-26 AT1G35620 549 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.013G111400 [exp] 108 / 2e-25 AT1G35620 533 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.010G222100 [exp] 98 / 9e-22 AT3G54960 275 / 2e-87 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.002G198300 [exp] 95 / 3e-21 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G122800 [exp] 94 / 7e-21 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018156 [exp] 728 / 0 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10029681 [exp] 702 / 0 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10042721 [exp] 702 / 0 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10025679 [exp] 508 / 5e-179 AT1G21750 482 / 8e-169 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10037403 [exp] 241 / 8e-73 AT5G60640 729 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10015305 [exp] 206 / 2e-63 AT1G21750 189 / 1e-57 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10022581 [exp] 214 / 2e-62 AT5G60640 741 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10021478 [exp] 213 / 2e-62 AT5G60640 740 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10035870 [exp] 166 / 3e-45 AT1G52260 632 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) Lus10025792 [exp] 143 / 1e-37 AT3G16110 553 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin CL0172 [poplar] [flax] Thioredoxin PF07912 [poplar] [flax] ERp29_N ERp29, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G179000.1 pacid=42805317 polypeptide=Potri.005G179000.1.p locus=Potri.005G179000 ID=Potri.005G179000.1.v4.1 annot-version=v4.1 ATGATGGCTTCTAAGGTTTCGCTTTGGTCTTGTATATTCGTCTTCTCTCTAGTTGTAGCGCTTTCTACTGGAGAGGATGAATCTAAGGAGTACGTGTTGA CGCTAGACCACTCCAATTTCACTGAGACCGTCACCAAGCACGATTTCGTCGTCGTCGAGTTCTACGCTCCTTGGTGTGGCCACTGTCAGAATCTAGCACC AGAGTATGAGAAAGCAGCTTCTATATTGAGCAGTAACGATCCTCAAATTGTTCTTGCCAAAGTTAATGCCGATGAGAAGGTTAACCAAGAGATCTCTGAG AAATATGAGGTTCAGGGATTCCCCACAATTAAAATTTTGAGAAAGGGAGGGACATCTGTTAACGAATACAAAGGCCCTCGTGATGCAGATGGCATTGCTG AGTATCTGAAGAAACAAACCGGTCCTGCTTCTGCTGAATTGAAATCAGCTGATGATGCTACTAGTTTCATTGGTGACAACAAAGTAGTAATTGTTGGGGT GTTCCCAAAGTTTTCTGGAGAGGAGTTTGAGAGCTTTCTCGCTGTCGCAGATAAATTGCGTTCTGACTATGAATTTGCCCACACTTTGGATGCTAAGCAC CTTCCACGCGGGGAATCATCGGTGTCTGGACCCCTAGTTAGATTGTTCAAGCCATTCGATGAACTCTTTGTTGATTCTAAGGACTTTAATGTGGATGCTC TTGAGAAGTTTATTGAAGAGTCCAGTGCACCCATTGTGACTGTCTACGATGATGAACCAAGCAATCACCCTTATATTGTCAAATATTTTGACAGCCCCCT TGATAAGGCAATGTTATTTTTGAACTTCAGCGGTGACAGTGCTGATTCCATTAAAACTAACTATCAAGAAGTTGCTGAGCAACACAAAGGGGATGGGTTA ATCTTTTTGTTGGGAGACCTTGAGGCTAGTCAAAGTGCCCTACAGTACTTTGGACTCAAAGAGGACCAAGCGCCTCTTCTCGTCATACAGACCACAGATG GAAAGAAATACTTGAAGTCAAACTTGGAGTCTGATCATATTGCTCCTTGGGTGAAGGAGTACAAGGAAGGCAAAGTACCGCCATTTATTAAATCTGAACC TATCCCCGAAGCTAATGAAGAGCCAGTGAAAGTTGTTGTCGCTGACAGCCTTGATGACTTGGTTACCAAATCTGGAAAAAATGTCCTTTTGGAGTTTTAT GCCCCTTGGTGCGGTCACTGCCAAAAATTGGCTCCAATCTTGGAGGAAATTGCCGTCTCATATCAAAGTGATGCTGATGTTCTTATTGCGAAGCTTGACG CAACTGCAAATGATATCCCAGGCGATACTTACGACGTCAAAGGATTCCCCACAGTCTACTTCAGGTCAGCTAGTGGAAAGTTGGTGCAGTATGAAGGAGA TAAGACCAAACAAGACATCATTGATTTCATTGAGAAGAACAGGGATAAAGTTGCCCAACAAGAGCCAGCAAAAGATGAGCTTTGA
AA sequence Show only first row Show all	>Potri.005G179000.1 pacid=42805317 polypeptide=Potri.005G179000.1.p locus=Potri.005G179000 ID=Potri.005G179000.1.v4.1 annot-version=v4.1 MMASKVSLWSCIFVFSLVVALSTGEDESKEYVLTLDHSNFTETVTKHDFVVVEFYAPWCGHCQNLAPEYEKAASILSSNDPQIVLAKVNADEKVNQEISE KYEVQGFPTIKILRKGGTSVNEYKGPRDADGIAEYLKKQTGPASAELKSADDATSFIGDNKVVIVGVFPKFSGEEFESFLAVADKLRSDYEFAHTLDAKH LPRGESSVSGPLVRLFKPFDELFVDSKDFNVDALEKFIEESSAPIVTVYDDEPSNHPYIVKYFDSPLDKAMLFLNFSGDSADSIKTNYQEVAEQHKGDGL IFLLGDLEASQSALQYFGLKEDQAPLLVIQTTDGKKYLKSNLESDHIAPWVKEYKEGKVPPFIKSEPIPEANEEPVKVVVADSLDDLVTKSGKNVLLEFY APWCGHCQKLAPILEEIAVSYQSDADVLIAKLDATANDIPGDTYDVKGFPTVYFRSASGKLVQYEGDKTKQDIIDFIEKNRDKVAQQEPAKDEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.005G179000 [exp]	0	1	Pt-PDI.2
AT1G50200		ACD, ALATS	Alanyl-tRNA synthetase (.1.2)		Potri.007G070250 [exp]	2.44	0.7330
AT4G14965		ATMAPR4	membrane-associated progestero...		Potri.006G023801 [exp]	17.32	0.6472
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.007G105200 [exp]	27.00	0.6228
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G023002 [exp]	31.01	0.6272
					Potri.013G160350 [exp]	34.69	0.7089
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Potri.007G061540 [exp]	37.84	0.7070
AT3G15370		ATHEXPALPHA1.24...	expansin 12 (.1)		Potri.001G401700 [exp]	45.82	0.5842
AT3G28050			nodulin MtN21 /EamA-like trans...		Potri.001G032100 [exp]	51.91	0.6479
AT4G25760		ATGDU2	glutamine dumper 2 (.1)		Potri.004G108560 [exp]	55.69	0.5934
					Potri.008G084001 [exp]	76.54	0.6725

Compare expression of checked genes

Potri.005G179000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.