Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21740 617 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 524 / 6e-173 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 314 / 1e-93 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G17110 293 / 6e-87 Protein of unknown function (DUF630 and DUF632) (.1) AT5G54480 193 / 1e-51 Protein of unknown function (DUF630 and DUF632) (.1) AT1G20530 189 / 9e-51 Protein of unknown function (DUF630 and DUF632) (.1) AT4G30130 170 / 7e-44 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 167 / 3e-43 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 167 / 8e-43 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 160 / 1e-40 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G082000 [exp] 1181 / 0 AT1G21740 644 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G182900 [exp] 350 / 3e-107 AT4G35240 639 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.009G142900 [exp] 342 / 4e-104 AT4G35240 621 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.005G070200 [exp] 337 / 7e-103 AT1G21740 315 / 3e-94 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G249400 [exp] 273 / 3e-80 AT1G20530 359 / 9e-116 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G011700 [exp] 243 / 1e-69 AT4G35240 348 / 5e-109 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.004G177200 [exp] 227 / 3e-63 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G108400 [exp] 215 / 6e-59 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 211 / 1e-57 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029683 [exp] 763 / 0 AT1G21740 696 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10042722 [exp] 751 / 0 AT1G21740 659 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10023949 [exp] 348 / 6e-109 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10014445 [exp] 345 / 1e-105 AT4G35240 712 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10025077 [exp] 229 / 2e-63 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10024007 [exp] 228 / 5e-63 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024039 [exp] 191 / 9e-51 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10015534 [exp] 187 / 1e-49 AT2G19090 480 / 4e-160 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041710 [exp] 182 / 6e-48 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10020009 [exp] 163 / 2e-43 AT2G19090 381 / 1e-125 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [poplar] [flax] DUF632 Protein of unknown function (DUF632) PF04783 [poplar] [flax] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Potri.005G179100.1 pacid=42805698 polypeptide=Potri.005G179100.1.p locus=Potri.005G179100 ID=Potri.005G179100.1.v4.1 annot-version=v4.1 ATGGGCTGTGGAGGATCTAAGGTGGATGATTTACCACTAGTAACTCTCTGCAGAGAGCGCAAAGAAGAAATCAAAGCTGCTTCCGACCACCGCTACGCTC TCGCTGCTGCACACGTGGCTTATTTCCATTCACTCAGGGAAGTCGGCGACGCGATTCGCCGATTTGTCGATGAAGGGCTCGTGATCGCCTCTTCCTCTAC TTCTCCTGCCTCTCCCGTACTAACATTACCGCCTCGCGAAGGAAAATCCAGGCACAAATCGAAGGATTCCTCTGCTTCAACCTCACTTTCGCACTCTGCA GACAGCAAAAGTAAAGACGACGAGGTTGAAGATTCGCATTTGCATTTGTCTTCCGGGTCGGATACCGAATCGGACTCATCGGGTCATATCCGCTTTCATG ACACCCCTGAAGAGGAAGAAGAAGCCGTAAGAGAGGTGCCTCCAACCTCTTACAATAATAATTTTACTGATTATCAACAACCTCAAGGAAATTGGGGCTT TCCTAATTATTCAGGAGATAACCCGTACTATAACCAGTACCCGTATCCATACCCGCATGAGAATTCGTATTCTAATACGTTTTATATGAAAAGGTCTGCT ACCCCGGCCAAAAAGGTGGTGTATGAGGACCCGTCTGTAAATGGGTCTTCGGGTTATTATGGAGGTGGGTATTTTGGGTACCCGATGATGGGATCGCCCG CAAGACAGCCATCTCCCGAAAAGCCACCACCGGTGCCACCATCGCCACCGAAAGTGTCGACATGGGATTATTTCAACGTGTTTGATGCATACGATAATGG TGGGAGTGGTGGGTATCCGGGTTATTATCCCAATGCGAGATACGGGTATGGGTCGAGTACCAGTAGCCTGGATTCGAAGGAGGTGAGGGAGAGAGAAGGG ATACCTGATTTGGAAGATGAAGCGGAGCAAGAAGCGATGAAAGAGGTTCATAAAGAGAAGAAGAAAGCGATGAAAGAGGTTCATAAAGAGAAGAAGAAAG CGAGTGAAGACATGGATTTGAATGGGAAAATGAAATTTAATGAGGAAATGAAGAGGAATTACGGAGAGGGTACTTCAAAATCTGGGCATATTGCAAGTAG TAGTGAGAGTTTAGAGTCAATTAAGGGTAAAGGAATTAAGAGCAGTATGAGTCCGGATACAATTCAGAGTCCTGATAGCATTGTATCGAAGAGTCCCGGA GAGGGGACTGTGAGGAAAAAGGGGGTCACTTTTGAGGTTGAAGATGCATCTAATGTAACAATGGATGTTGAGTCTTCAAAGCATAGTAGTGTTGCTACTT CTACTACTACATTGTCGGCTCATGGCACAAGGGATCTTCAAGACGTGGTCAAGGAAATCAGCGATGAGTTTGAGACTGCTTATGATTATGGGAAAGAGGT TGCATTAATGCTTGAGGTGAGCAAGTTGCCTTACCAACACCAGCGAAGAAGTACCCTGCTTAAAGTGATTCTTTCCAGGATCCTGTATTTGGGGTCTTCC CACCCTCCTGCAAGGCCATCAGCACGCATTTCTTCTAGGACAATGAAATTGGCTAAAGCTTATGCTGCCGAACCTGGAAATGACTTTGACCCAAGGCACA GAAACCTTTCATCTACTCTACAGGAAATTTATGCTTGGGAGAAGAAACTATACAAGGAAGTGAAGGATGAAGAGCGGCTACGAGTCATGTATGAAAAGCA GTGCAAAAGGTTAAAAATATTGGATGACCGTGGAGCTGAGTCTAGTAAAATTGATGCTACACAGGCTTCAGTAAGAAAATTGCTGACAAAAATCAATGTT TGTATCCGAGCTGTTGATGCTATATCTAGTAAGATACACAGGTTGAGGGATGAAGAATTGGAGCCTCAGATCACTAAATTGATTCACGGATTGATAAGGA TGTGGAAGTCCATGCACAAATGTCACCAGAAGCAGTTCCAAGCTATCATGGAAAGCAAAGTTCGCTCTCTTAAGGCACAGAGAGATTCTGGTTTGAAAGC CACGGTTGAACTTGAAATGGAGCTTATCAATTGGTGCACCTGCTTTAACAACTGGATTAATACCCAAAAATCTTATGTTGGGTCATTAAATAGGTGGCTT TTAAGGTGTCTTAACCAGGAACCTGAAGAAACCCCTGATGGGATTGCGCCATTTTCCCCAAGTAGGATTGGTGCTCCGCCTATTTTTGTAATTTGCAATG ATTGGTACCAGGCAATAGGTAGGGTTTCTGAGGAGGGAGTTGAAAATGCGATGCTTGGTTTTGCTTCAAGTTTGCATCAGTTGTGGGAACGGCAAGGTGA GGAGCAACGACAGAGGATCAAAGCAGAGTACCTTACAAAGGATTTTGAGAAACGGCTTAAAACCCTACGTATGGAGAAGGAAAGGATCGAGCATGAGCAT GATGCATCATTAGATAAAAGTACGTCAAAGGTTCCTTCAGATAGTGGAATCTCACCGCTAGATGATCTGAAGGTGGATTTGGATTCAATGAGGAAGAAAT TGGAAGAAGAGAGAGCAAGGCACAAGGAAGCGGCCAAATTAGTTCATGATGCAGCTTCTAGTAGTTTACAAGCAGGTTTGGTCCCAATTTTTGAGGCTTT GGGCAGCTTCACTTCAGAATTTTTGAAAGCTCATGAAGAAATTAGGCTTCAAGATGCTGGACGCCCATAG
AA sequence Show only first row Show all	>Potri.005G179100.1 pacid=42805698 polypeptide=Potri.005G179100.1.p locus=Potri.005G179100 ID=Potri.005G179100.1.v4.1 annot-version=v4.1 MGCGGSKVDDLPLVTLCRERKEEIKAASDHRYALAAAHVAYFHSLREVGDAIRRFVDEGLVIASSSTSPASPVLTLPPREGKSRHKSKDSSASTSLSHSA DSKSKDDEVEDSHLHLSSGSDTESDSSGHIRFHDTPEEEEEAVREVPPTSYNNNFTDYQQPQGNWGFPNYSGDNPYYNQYPYPYPHENSYSNTFYMKRSA TPAKKVVYEDPSVNGSSGYYGGGYFGYPMMGSPARQPSPEKPPPVPPSPPKVSTWDYFNVFDAYDNGGSGGYPGYYPNARYGYGSSTSSLDSKEVREREG IPDLEDEAEQEAMKEVHKEKKKAMKEVHKEKKKASEDMDLNGKMKFNEEMKRNYGEGTSKSGHIASSSESLESIKGKGIKSSMSPDTIQSPDSIVSKSPG EGTVRKKGVTFEVEDASNVTMDVESSKHSSVATSTTTLSAHGTRDLQDVVKEISDEFETAYDYGKEVALMLEVSKLPYQHQRRSTLLKVILSRILYLGSS HPPARPSARISSRTMKLAKAYAAEPGNDFDPRHRNLSSTLQEIYAWEKKLYKEVKDEERLRVMYEKQCKRLKILDDRGAESSKIDATQASVRKLLTKINV CIRAVDAISSKIHRLRDEELEPQITKLIHGLIRMWKSMHKCHQKQFQAIMESKVRSLKAQRDSGLKATVELEMELINWCTCFNNWINTQKSYVGSLNRWL LRCLNQEPEETPDGIAPFSPSRIGAPPIFVICNDWYQAIGRVSEEGVENAMLGFASSLHQLWERQGEEQRQRIKAEYLTKDFEKRLKTLRMEKERIEHEH DASLDKSTSKVPSDSGISPLDDLKVDLDSMRKKLEEERARHKEAAKLVHDAASSSLQAGLVPIFEALGSFTSEFLKAHEEIRLQDAGRP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21740			Protein of unknown function (D...		Potri.005G179100 [exp]	0	1
AT1G27200			Domain of unknown function (DU...		Potri.008G192000 [exp]	22.24	0.7973
AT3G24630			unknown protein		Potri.018G082300 [exp]	26.58	0.7946
AT2G28890		PLL4	poltergeist like 4 (.1)		Potri.001G239300 [exp]	27.27	0.8003
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Potri.007G104300 [exp]	39.94	0.7952
AT5G17680			disease resistance protein (TI...		Potri.019G068200 [exp]	67.64	0.7419
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014364 [exp]	73.09	0.7717
AT2G27080			Late embryogenesis abundant (L...		Potri.004G197600 [exp]	85.38	0.7763
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.005G146900 [exp]	128.98	0.7589
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.002G114200 [exp]	141.43	0.7354	Pt-ATCSLC12.1
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Potri.014G126100 [exp]	154.27	0.7631

Compare expression of checked genes

Potri.005G179100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.