Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ALDH3.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44170 736 / 0 ALDH4, ALDH3H1 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) AT4G34240 647 / 0 ALDH3I1 aldehyde dehydrogenase 3I1 (.1.2) AT4G36250 466 / 2e-161 ALDH3F1 aldehyde dehydrogenase 3F1 (.1) AT3G66658 180 / 4e-50 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT1G74920 155 / 1e-41 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G48170 140 / 3e-36 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G79440 140 / 4e-36 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT1G23800 139 / 1e-35 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G48000 130 / 2e-32 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT3G24503 115 / 1e-27 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G081800 [exp] 895 / 0 AT1G44170 731 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.005G069800 [exp] 684 / 0 AT4G34240 626 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.001G412900 [exp] 677 / 0 AT4G34240 678 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.001G259100 [exp] 482 / 8e-168 AT4G36250 556 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.007G017100 [exp] 479 / 1e-166 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.008G106000 [exp] 164 / 2e-44 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.012G075600 [exp] 150 / 8e-40 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.015G070600 [exp] 147 / 8e-39 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.010G174000 [exp] 138 / 2e-35 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029684 [exp] 793 / 0 AT1G44170 742 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10025681 [exp] 761 / 0 AT1G44170 743 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10018153 [exp] 757 / 0 AT1G44170 734 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10015688 [exp] 638 / 0 AT4G34240 674 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Lus10042724 [exp] 634 / 0 AT1G44170 605 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10037694 [exp] 625 / 0 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10002557 [exp] 484 / 2e-160 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10031280 [exp] 450 / 4e-155 AT4G36250 555 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10041806 [exp] 447 / 5e-154 AT4G36250 640 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10031849 [exp] 445 / 3e-153 AT4G36250 550 / 0.0 aldehyde dehydrogenase 3F1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [poplar] [flax] ALDH-like PF00171 [poplar] [flax] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Potri.005G179300.2 pacid=42805288 polypeptide=Potri.005G179300.2.p locus=Potri.005G179300 ID=Potri.005G179300.2.v4.1 annot-version=v4.1 ATGGCGACGAAGGAGGAGGAGAACACGGTGTTTGATGTGGAGGCAGCGAATGTGTTAACCAAGGAGCTGAGAGACGTTTTTGCTTCTGGTAAAACAAGGA GTTACGAGTGGAGAATATCTCAGTTGAAGAGTATTGTTAAGATGTGCGATGAACACGAGGAAGACATTGTTGATGCTCTCCGTCAAGATCTCTCCAAGCC TCAACTTGAATCCATCGTTTATGAGTTAACTATGGTAAAAAACTCGTGTACATTGGCTATTAAGGAACTGAAACATTGGATGATGCCAGAGAAGGCAAAA ACTTCTTTGACAACTTTTCCTTCATCAGCTGAAATAGTGTCAGAACCACTGGGTGCTGTGTTGATTATTTCAGCATGGAATTACCCTTTCTTGTTGTCTA TGGATCCGCTCATTGGAGCTATTGCAGCCGGTAATGCTATGGTTTTAAAACCATCAGAAGTTGCACCAGCTACATCCTCACTGCTTGCAAAGCTACTTCC AGAGTATTTGGATTGCTCTTCGATAAAGGTTGTTGAGGGGGCTGTTTCTGAAACTTCTGCACTACTGGAGCAAAAGTGGGACAAAATATTTTATACAGGC AATGGAAGAGTAGGACGAATTGTGATGGCTGCTGCAGCAAAACACCTTACACCGGTTGTTTTGGAGCTTGGAGGAAAATCTCCAGTTGTTGTTGATTCAG GTATCGATATACAGATTGCAACTAGGCGGATAATTGTAGGCAAGTGGGGGTGTAATAATGGACAAGCATGCATCTCTCCGGATTACATAATAACAACGAA AGATTGTGCTGAGAAGCTGGTGGACTCTCTGAAAAAAGAACTGGAGGCATTTTATGGAAAGAACCCATTGGAATCAAAAGATTTATCTCGAATTGTGAAT TCCAACCATTTTTCTCGTTTGACAAAGCTACTGGATGAGGATAAGGTTTCTGGGAAGATTGTTTATGGAGGTGAAAGAGATGAAGCCAACCTGAGAATTG CTCCCACCATATTATTGGGCGTCCCACAAAACTCTCTAATAATGAAAGAAGAGATATTTGGTCCATTGCTTCCCATTCTCACTGTCAGCAAAATCGAGGA TAGCTTTGATATAATAAAATCAGGAACAAAGCCACTTGCAGCTTATTTATTTACCAATAACAAGAAGCTGAAGGAGCAGTTTTTGATGTCTGTTTCTGCA GGGGGTGTGGTCATTAATGACACTACTCTGCATCTTGCAGTTCATAGTGTACCATTTGGGGGCGTGGGCGAGAGCGGAATGGGTTCATACCATGGCAAAT TTTCCTTCGATGCTTTTACCCACAAGAAGGCAGTCGTGTATCGAAGTTTTGTAGGTGATGCATCTGTGAGATATCCACCGTACACACTGGGAAAGCTAAG ATTGATGAAGGCTTTAATCACTGGTAATGTATGGACAATACTTCGCACCCTGCTTGGAATGTCTTAA
AA sequence Show only first row Show all	>Potri.005G179300.2 pacid=42805288 polypeptide=Potri.005G179300.2.p locus=Potri.005G179300 ID=Potri.005G179300.2.v4.1 annot-version=v4.1 MATKEEENTVFDVEAANVLTKELRDVFASGKTRSYEWRISQLKSIVKMCDEHEEDIVDALRQDLSKPQLESIVYELTMVKNSCTLAIKELKHWMMPEKAK TSLTTFPSSAEIVSEPLGAVLIISAWNYPFLLSMDPLIGAIAAGNAMVLKPSEVAPATSSLLAKLLPEYLDCSSIKVVEGAVSETSALLEQKWDKIFYTG NGRVGRIVMAAAAKHLTPVVLELGGKSPVVVDSGIDIQIATRRIIVGKWGCNNGQACISPDYIITTKDCAEKLVDSLKKELEAFYGKNPLESKDLSRIVN SNHFSRLTKLLDEDKVSGKIVYGGERDEANLRIAPTILLGVPQNSLIMKEEIFGPLLPILTVSKIEDSFDIIKSGTKPLAAYLFTNNKKLKEQFLMSVSA GGVVINDTTLHLAVHSVPFGGVGESGMGSYHGKFSFDAFTHKKAVVYRSFVGDASVRYPPYTLGKLRLMKALITGNVWTILRTLLGMS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Potri.005G179300 [exp]	0	1	ALDH3.3
AT2G18890			Protein kinase superfamily pro...		Potri.018G091200 [exp]	4.69	0.6692
AT3G07340	bHLH	bHLH062	basic helix-loop-helix (bHLH) ...		Potri.002G248500 [exp]	7.00	0.6817
AT1G71820		SEC6	SEC6 (.1.2)		Potri.013G117400 [exp]	25.23	0.6116
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Potri.006G070400 [exp]	42.24	0.5935
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Potri.001G027000 [exp]	46.15	0.6380
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Potri.006G079200 [exp]	48.74	0.6544
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.004G223300 [exp]	58.44	0.6064
AT5G10020			Leucine-rich receptor-like pro...		Potri.007G082800 [exp]	75.63	0.6295
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Potri.001G398500 [exp]	78.23	0.6106
AT3G06778			Chaperone DnaJ-domain superfam...		Potri.010G005700 [exp]	95.47	0.5676

Compare expression of checked genes

Potri.005G179300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.