Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11040 250 / 2e-79 HSP40/DnaJ peptide-binding protein (.1) AT1G44160 221 / 2e-69 HSP40/DnaJ peptide-binding protein (.1) AT3G08910 171 / 3e-50 DNAJ heat shock family protein (.1) AT2G20560 169 / 3e-49 DNAJ heat shock family protein (.1) AT1G10350 167 / 8e-49 DNAJ heat shock family protein (.1) AT4G28480 164 / 2e-47 DNAJ heat shock family protein (.1.2) AT5G01390 161 / 1e-46 DNAJ heat shock family protein (.1.2.3.4) AT1G59725 159 / 7e-46 DNAJ heat shock family protein (.1) AT2G20550 157 / 2e-45 HSP40/DnaJ peptide-binding protein (.1.2) AT5G25530 158 / 4e-45 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G081700 [exp] 558 / 0 AT1G11040 253 / 1e-80 HSP40/DnaJ peptide-binding protein (.1) Potri.001G211800 [exp] 221 / 1e-69 AT1G11040 197 / 2e-59 HSP40/DnaJ peptide-binding protein (.1) Potri.011G057601 [exp] 177 / 1e-52 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 166 / 2e-48 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.017G016000 [exp] 166 / 4e-48 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 165 / 8e-48 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 164 / 1e-47 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.015G066100 [exp] 163 / 3e-47 AT3G47940 436 / 5e-154 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 162 / 1e-46 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042725 [exp] 274 / 2e-88 AT1G11040 256 / 2e-80 HSP40/DnaJ peptide-binding protein (.1) Lus10029685 [exp] 274 / 3e-88 AT1G11040 257 / 1e-80 HSP40/DnaJ peptide-binding protein (.1) Lus10025682 [exp] 270 / 2e-87 AT1G11040 241 / 4e-75 HSP40/DnaJ peptide-binding protein (.1) Lus10018152 [exp] 265 / 3e-85 AT1G11040 246 / 5e-77 HSP40/DnaJ peptide-binding protein (.1) Lus10020822 [exp] 165 / 6e-48 AT1G11040 182 / 7e-54 HSP40/DnaJ peptide-binding protein (.1) Lus10030803 [exp] 164 / 1e-47 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10017687 [exp] 161 / 3e-46 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 160 / 4e-46 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10021961 [exp] 160 / 5e-46 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10005033 [exp] 160 / 5e-46 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01556 [poplar] [flax] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G179400.2 pacid=42803817 polypeptide=Potri.005G179400.2.p locus=Potri.005G179400 ID=Potri.005G179400.2.v4.1 annot-version=v4.1 ATGGTTCGTCCTGACATTCTAGGCTTACCAACAGGTGCCCCCGTTTCTGTGAAGAAAGAGCAATCTTCCAGCTTTAAAGAATTTTGCAAAGCCTGTCTAT CCATATTCGCCGGATGGTGTAGCGTTGATAGAAAATTATCTCCACCTTCTTCAGGCAGATCAGATGAATTACAAGTGAAATTTGAAGCCATCAGCCAAGC TCCCGAGGAACTTGGTTACGATACAGAAGAGGGAAAGACGATGAATGGAATCCACAGTTTTAGATACAATGCTAATAGTATGCGAGGTGACAATCCTTCG AGTCCAAGAGGATTCTTCAGGCATAAAAGCATGGATGGCTGCTTTCCCAATATATCTTCTCCTCTGTCAAGAAGTGGAAGCCTGAAGAGCCCTTCTCGAA AATTATCTTTCCGAAAGAGAAATACGAGTCAGAAAAGAACCGATTCACGTCATGGCTTGTCCGCATCTCTCTCAAGAAATGCAAGCCGGAAGAACGCCAG CACCATCATGTTTTCAAACTCAATGGGAAAGATGAAACCTCCGGCTATTGAAAGGCCTCTCGAGTGCACGCTTGAGGAGCTATGTTATGGATGCATGAAA AAGATCGAGATAACAAGAGATGTCATAATTACAAATACAGGGCAAGTAATCCAAGAAGAGGAAACATTGACAGTTAGAGTGAAGCCAGGATGGAAAAAGG GAACGAAGATCACATTTGAAGGAATGGGAAATGAGAGGCCTGGCACTTGCACAGCTGATATAATCCTCGTGATTGCCGAGAAACGACACTCTCTGTTTCG GAGGGAAGGAGAAGGTTTGGAGATAGGAGTAGAAGTTCCACTAGTGAAGGCTCTAACTGGCTGCCAGATCTCAATCCCTTTGTTGGGCGGTGAGGAAACA AGTTTGATGATCGATGATATCATTCACCCTGGCTATGAAAGGATCATAGAAGGTCAAGGCATGCCAAGCACAAAAGAGCAGGGGGGGAGAGGAAACTTGA GAGTTGTCTTCCTCGTTGAATTCCCGACACAACTGACAGATGAACAACGGTCAGATATTCGTACTATTTTAGAGGATTCTTCTTGA
AA sequence Show only first row Show all	>Potri.005G179400.2 pacid=42803817 polypeptide=Potri.005G179400.2.p locus=Potri.005G179400 ID=Potri.005G179400.2.v4.1 annot-version=v4.1 MVRPDILGLPTGAPVSVKKEQSSSFKEFCKACLSIFAGWCSVDRKLSPPSSGRSDELQVKFEAISQAPEELGYDTEEGKTMNGIHSFRYNANSMRGDNPS SPRGFFRHKSMDGCFPNISSPLSRSGSLKSPSRKLSFRKRNTSQKRTDSRHGLSASLSRNASRKNASTIMFSNSMGKMKPPAIERPLECTLEELCYGCMK KIEITRDVIITNTGQVIQEEETLTVRVKPGWKKGTKITFEGMGNERPGTCTADIILVIAEKRHSLFRREGEGLEIGVEVPLVKALTGCQISIPLLGGEET SLMIDDIIHPGYERIIEGQGMPSTKEQGGRGNLRVVFLVEFPTQLTDEQRSDIRTILEDSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11040			HSP40/DnaJ peptide-binding pro...		Potri.005G179400 [exp]	0	1
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Potri.003G093400 [exp]	4.00	0.9049
					Potri.003G083000 [exp]	4.35	0.9278
AT5G13500			unknown protein		Potri.003G195600 [exp]	5.29	0.9087
AT1G21070			Nucleotide-sugar transporter f...		Potri.005G260300 [exp]	6.78	0.9244
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G120800 [exp]	8.77	0.9050	FLA14.5
AT1G73965		CLE13	CLAVATA3/ESR-RELATED 13 (.1)		Potri.008G115600 [exp]	9.48	0.8991	CLE12.2
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G121100 [exp]	12.48	0.8967
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.012G015032 [exp]	13.41	0.9085
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.009G012200 [exp]	14.49	0.9059	FLA14.12
AT1G49960			Xanthine/uracil permease famil...		Potri.009G086800 [exp]	16.61	0.8980

Compare expression of checked genes

Potri.005G179400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.