Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	UBP26.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49600 1244 / 0 SUP32, ATUBP26, UBP26 ubiquitin-specific protease 26 (.1) AT3G11910 133 / 3e-31 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT5G06600 132 / 4e-31 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT2G22310 123 / 4e-30 ATUBP4 ubiquitin-specific protease 4 (.1.2) AT4G39910 120 / 3e-29 ATUBP3 ubiquitin-specific protease 3 (.1) AT4G31670 110 / 1e-24 UBP18 ubiquitin-specific protease 18 (.1) AT5G57990 110 / 3e-24 UBP23 ubiquitin-specific protease 23 (.1) AT2G24640 105 / 3e-23 UBP19 ubiquitin-specific protease 19 (.1.2) AT4G24560 99 / 1e-20 UBP16 ubiquitin-specific protease 16 (.1) AT1G17110 99 / 1e-20 UBP15 ubiquitin-specific protease 15 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G081600 [exp] 1893 / 0 AT3G49600 1251 / 0.0 ubiquitin-specific protease 26 (.1) Potri.010G245100 [exp] 131 / 1e-30 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G012600 [exp] 130 / 1e-30 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 130 / 2e-30 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.006G198300 [exp] 126 / 4e-29 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.006G270600 [exp] 115 / 3e-26 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.018G009500 [exp] 112 / 3e-25 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.007G093600 [exp] 107 / 1e-24 AT4G39910 679 / 0.0 ubiquitin-specific protease 3 (.1) Potri.011G095200 [exp] 109 / 5e-24 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042726 [exp] 1369 / 0 AT3G49600 1296 / 0.0 ubiquitin-specific protease 26 (.1) Lus10029686 [exp] 1319 / 0 AT3G49600 1255 / 0.0 ubiquitin-specific protease 26 (.1) Lus10043456 [exp] 134 / 2e-31 AT5G06600 1925 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034130 [exp] 132 / 5e-31 AT3G11910 1888 / 0.0 ubiquitin-specific protease 13 (.1.2) Lus10008949 [exp] 132 / 6e-31 AT5G06600 1904 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10029309 [exp] 131 / 1e-30 AT5G06600 1957 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10035825 [exp] 108 / 8e-24 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10041705 [exp] 105 / 9e-24 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10024043 [exp] 105 / 9e-24 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10036607 [exp] 108 / 1e-23 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF13423 [poplar] [flax] UCH_1 Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.005G179500.8 pacid=42804439 polypeptide=Potri.005G179500.8.p locus=Potri.005G179500 ID=Potri.005G179500.8.v4.1 annot-version=v4.1 ATGACTCCACCAGCTACGCGAGGTAAAAATAAAAGGAATAGACCGGGTGATATTGCTAATATCACTTCTGAAATATTAAGGAAAATTCATGCAAATGGTA AAGTTACCGATGGAGATGTGAACCAGCTGTACATGATATGGAAGCCAGTTTGTCAAGGCTGCCGTGTGAATACTAAAGATAACCCTAACTGCTTTTGTGG ATTGATTCCACCACCCAATGGAAGTCGTAAATCTGGCTTATGGCAGAAAATGTCTGATATTCTTCAAGCGCTTGGCTCAGACCCATTCAATGATCTTCGT AGTACTGATGAAACTCCGTCTGGTCTAACTAATCTGGGAGCAACATGCTATGCCAATAGTGTACTTCAGTGTCTGTACATGAACGCCTCGTTTCGAGAAG GTGTTTTCTCTGTTGAGCCAGATGTGTTAAACGAACAGCCTGTGTTATATCAGCTTGTCCGGCTTTTTGCACAGTTGCATGCTAGTAAATTAGCTTTTAT TGATCCAGCTCCATTTATAACGACCCTGGAGCTGGATAATGCAGTTCAGCAGGATGGCCATGAGTTCCTGACCTTGCTTCTTTCACTGCTTGAACGTTGT CTGAGCCACTCTAAAGTTTCTAAGGCGAGAACAATTGTTCAAGATCTTTTTCGAGGAAGTGTATCACAAGTAACAACGTGCTCAAATTGTGGAAGAGATT CTGAAGCATCTTCCAAAACTGAAGACTTCTACGAGCTGCAGATGAATGTCAAAGGCTTGAAAAGCTTAGACGAGAGTTTGGATCAGTACCTTAGTGTGGA ACAGCTTCATGGAGAGAATCAATACAATTGTGAATTGTGTAAAAGCAGAGTCGATGCTACTCACCGCATCAGGCTGCGAACTCTACCTGATGTCCTTAAT TTTCAGCTTAAGCGTTACGAGTTCCTTCCAAAGACTACTACAAGGAAGAAAATCACATCTGCTTTTGGTTTCCCTGGAGAATTGGATATGGGGCGTAGGC TGTCTGAACCTTCTCAGCTGGAATGGATATATGACTTGTCAGCTGTGTTGATTCACAAGGGAACTGCTGTAAATAGCGGCCATTACATTGCTCATATCAA GGATGAGAATACAGGGCAGTGGTGGGAATTTGATGATGAGCATGTCTCAAACCTAGGTCGTCGCCCATTTGGAGAAGGCTTTTCAAGTTCTGCTAAAGGT GTTCATAGTGACAAAGTTTCACCATCTTGTGCAGGAGCAACGCTTGCTGATACCAGCAGAAGTATGGATGCTGTTCAGCCACAATCTTTAGAATCTAACA TTCATAGTTGTAAAGAGATTTTTTCATCTACTGATGCATACAGGCTGATGTATAATCTTAGGCGTACTAGAAAGAATGATGGTAAAAGAGATCATATTGC CAACAATATTCAATTAGAAGGTCACAAGGGTTTACACAATGGCTTTCATCCTGCATCTCAACTCTTTGAGGATATAAATGATATGAATGCATCATATGCT GCTGCTTGTGAAGAGTACAAATTGAAGAAGGAAAAAGAGGTGCGTCATATCACAGAACGGAGAGAAGAGGTGCGATCAGTTCTCTCAGAAGCTCCTGTTC GATTGCATCAAGAACCATTTTATTGGGTTTCTACGGACTGGCTTCGCCAGTGGGCTGACAATGTCACTCCAGGTGTTATAGACAACAAGCCTATCCAATG CTTACATGGAAAGGTTCCAGTGTCTAAAGTTGGGTCCATGAAGCGGTTGTCTGCTAAAGCTTGGGGAATCTTGTTTTCTAAGTATGATGGAGGGCCAGCA CTGACCAATAGTGACTGCTGCATGGCTTGCCTTATTGATGGTGCCAAATCTGTGGTCTTTGCTGATAGCTATAGGGATCAAAGAACATTAATGAGAGATC TTGCAAATGATGTAATTGCTGGGAAGTGCTTGGATGGAGCATATTTTGTGTCCAAGACATGGCTGCAACAGTGGGTGAGACGAAAAAATATTGATGCTCC AAGTGAAGCTGATGCAGGACCAACAGCTTCAATTATGTGCCGACATGGACAACTAAGACCTGAGCAAGCTGGTGCCAAGCGATTGCTGGTTCCTGAGACA CTTTGGCACTTTTTGTACAAGGATGCGGTTGCTGTAAAGTCTGATGATCCCTTGGGATGCACAACTTTTCCTTCAGATTCTGCACAGTGTTCTGAATGCA GTGATGAACTTTCTGAAGTTGCCTGCTTTGAGGATTCTATAAGGGAGATGAAGCTCAAACAGCGCCAAAATCATGAGAAGTTGGCTACTGGAAAGAGTAT TCCCCTGTCTTTGAACTGCACGTATTACTTGATGCCTTCTTCTTGGCTCACAAAATGGAGAAACTACATAAATTCAAGTGGAAAGAATATTTCTTCATCA GTGGAACCTGAAGTTCTCGATCCTGTTATTGATGCACTGAAATGTGAATGGCATTCACGACTCCTAGAAAGGCCTCCTGACCTGGTGAACAAACGCGGTG TGCTTATACAGAAGAGTTCTACTACAGATGCTTTAACAATAATTACAGAGAATGACTGGAACAGCTTCTGTGAAGACTGGGGCGGCAACAAGGAGAAAGG CATAATGGCAACAATTGAGTCCAGTGATGTTGCAGAAAATAATTTGGGTGGGTCCCAGGAAGATGTGTTTGTATTTAAAGACCATCCAAGTTCTCAGGAC GAAGCAAACAATGACCCAGAGATCAGACAGCCTTTGATTAGGACCTCTCCAGAGATTTGCGAGGATTGCATTGGTGAAAGAAAAAGTCGTGAGTTGGCGA AGAAGCTGAATTACTTCAATGAGGACATAAATGTATCTCTTGTACGTGGCAAGGAAGCTCCAAGATCAATTTTAGAAGCTTCTTCAACTACTCCTGAGAC AGATCGGCGCGCCTCCAAGCGATCTCGAAAGACCAGTTATGGGACTTCAGTAAATCTAAAAGTTTCTGGTTCCACATCATTATACCAGTTAAAAATGATG ATATGGGAATCACTTGGGGTGGTTAAGGAGAACCAGATACTTCACAAAGGTTCAATGATAATTGATCAGGAAAGTGCTACGCTTGCAGACTTGAGTATAT TTCCTGGTGATAAGTTGTGGGTGCAAGATTCTGAAATCCACGAGCATAGAGATATTGCTGATGAGATTACTGACCAGAAAGCAAACGCACAGCATCCTGA AAAGGGGTTTCAGGGAACACTTTTGACTACAACGACTTCATCCCAAGTTGCTTAA
AA sequence Show only first row Show all	>Potri.005G179500.8 pacid=42804439 polypeptide=Potri.005G179500.8.p locus=Potri.005G179500 ID=Potri.005G179500.8.v4.1 annot-version=v4.1 MTPPATRGKNKRNRPGDIANITSEILRKIHANGKVTDGDVNQLYMIWKPVCQGCRVNTKDNPNCFCGLIPPPNGSRKSGLWQKMSDILQALGSDPFNDLR STDETPSGLTNLGATCYANSVLQCLYMNASFREGVFSVEPDVLNEQPVLYQLVRLFAQLHASKLAFIDPAPFITTLELDNAVQQDGHEFLTLLLSLLERC LSHSKVSKARTIVQDLFRGSVSQVTTCSNCGRDSEASSKTEDFYELQMNVKGLKSLDESLDQYLSVEQLHGENQYNCELCKSRVDATHRIRLRTLPDVLN FQLKRYEFLPKTTTRKKITSAFGFPGELDMGRRLSEPSQLEWIYDLSAVLIHKGTAVNSGHYIAHIKDENTGQWWEFDDEHVSNLGRRPFGEGFSSSAKG VHSDKVSPSCAGATLADTSRSMDAVQPQSLESNIHSCKEIFSSTDAYRLMYNLRRTRKNDGKRDHIANNIQLEGHKGLHNGFHPASQLFEDINDMNASYA AACEEYKLKKEKEVRHITERREEVRSVLSEAPVRLHQEPFYWVSTDWLRQWADNVTPGVIDNKPIQCLHGKVPVSKVGSMKRLSAKAWGILFSKYDGGPA LTNSDCCMACLIDGAKSVVFADSYRDQRTLMRDLANDVIAGKCLDGAYFVSKTWLQQWVRRKNIDAPSEADAGPTASIMCRHGQLRPEQAGAKRLLVPET LWHFLYKDAVAVKSDDPLGCTTFPSDSAQCSECSDELSEVACFEDSIREMKLKQRQNHEKLATGKSIPLSLNCTYYLMPSSWLTKWRNYINSSGKNISSS VEPEVLDPVIDALKCEWHSRLLERPPDLVNKRGVLIQKSSTTDALTIITENDWNSFCEDWGGNKEKGIMATIESSDVAENNLGGSQEDVFVFKDHPSSQD EANNDPEIRQPLIRTSPEICEDCIGERKSRELAKKLNYFNEDINVSLVRGKEAPRSILEASSTTPETDRRASKRSRKTSYGTSVNLKVSGSTSLYQLKMM IWESLGVVKENQILHKGSMIIDQESATLADLSIFPGDKLWVQDSEIHEHRDIADEITDQKANAQHPEKGFQGTLLTTTTSSQVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Potri.005G179500 [exp]	0	1	UBP26.2
AT5G11470			bromo-adjacent homology (BAH) ...		Potri.006G244000 [exp]	1.73	0.7948
AT1G28090			Polynucleotide adenylyltransfe...		Potri.003G164400 [exp]	2.23	0.8115
AT5G42870		ATPAH2	phosphatidic acid phosphohydro...		Potri.014G031000 [exp]	5.00	0.7793
AT5G35930			AMP-dependent synthetase and l...		Potri.019G043800 [exp]	5.65	0.7895
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.015G146700 [exp]	9.79	0.7382
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.017G138500 [exp]	14.07	0.7596
AT5G57250			Pentatricopeptide repeat (PPR)...		Potri.018G143800 [exp]	15.00	0.7481	CYP71.3
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Potri.015G074900 [exp]	15.49	0.7390
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.006G271400 [exp]	19.26	0.7561
					Potri.005G127650 [exp]	20.29	0.6418

Compare expression of checked genes

Potri.005G179500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.