Plant FIBer expression Database

Potri.005G179700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G10910 413 / 3e-142 mraW methylase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042729
[exp]
501 / 2e-176 AT5G10910 434 / 3e-150 mraW methylase family protein (.1)
Lus10029688
[exp]
501 / 3e-171 AT5G05920 657 / 0.0 embryo sac development arrest 22, deoxyhypusine synthase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01795 Methyltransf_5 MraW methylase family
Representative CDS sequence
>Potri.005G179700.1 pacid=42804756 polypeptide=Potri.005G179700.1.p locus=Potri.005G179700 ID=Potri.005G179700.1.v4.1 annot-version=v4.1
ATGGCAAAGCGAATGATGTATTGCTGGCTGTCAACCCCATTATCAACAGCCAAACAACGCTTCAATATCAAAACAGCCCCCTCATTCTCCAGACCAGTTC
TTGCTTCTGCTAGAGCCGAAAGAAGTATTTCCACTGCCAGTAAGAAAAAGAAGAAAAAAGAGAGAAACAAATCCGTAGAGGAACTTGTTGTGGTAAAAAA
TGATAAGGAAAAGAGAAGAACTCGCTCAGAGAAAGAATACGAGGAGCTCCATTCTTTCCATGAGACTGAAAGTCACGTCCCTGTAATGCTAGGTGAAGTT
GTTGATGTTTTCTCTTCCTTACCTCTCCGCTCTTTCATCGACTGCACTCTTGGCGCCGCTGGTCATTCCTCTGCTATAATAAAGGGACATCCTGAATTAG
AATGTTACATAGGAATGGATGTGGATCCAGTTGCACATGCCAAGGCACGTGCTCATATTGATGCTCTCTTGCAATCAACCCGTACTAGTTTGAAACCACA
CTTGCTTTTCAAGAATTTCAAGTATATAAAATCTGTGGTTGGTGAGATTGGTGATGATTGCAAGCTCTTGAGCTCTGGAGTTGATGGCATCTTAATGGAC
CTTGGAATGTCATCCATGCAGGTGAACAATCCTCAAAGAGGGTTCAGTGTACTTGCTAATGGACCTCTTGATATGCGCATGGATCCTCGGGCAAGTGTGA
AAGCAAAGGACATATTAAATTATTGGCCAGATGATGAAGTGGGCCGAATTCTGCGCGAGTACGGAGAAGAAAGCAACTGGCGTTGGCTTCAGAAAAAGAT
TGTTCAGGCTCGTCAACAAGGTGGTTTGCATTCTACTAGTGAACTAAGAGATCTTATTCAGGGTGCAACTCATGGAACAAAAGGAGGGAGGCAAGGTTGG
ATAAAGACAGCAACACGGGTGTTTCAAGCTCTGAGGATAGCTGTCAATGATGAACTCAATACCCTGGAGAAGTCTCTTCACGCCTGTTTCGAGTGCCTTG
TCCCTGGAGGAAGGCTTGCTGTCATCTCTTTCCACAGTTTGGAGGACAGAATTGTAAAACAAACATTTCTAAAAATTATTGAAAGCAACGGGGGAGATGG
AGATGTGGTTGAAGAAGAGGCTGGTAAAAGAGATTTAAGAAAGATGAGAAATGACATTGATGCAAAAGAAACATGGATTCGACAGATGGTACAAGGCCAG
AATGGAACAATCCTTACCAAGAGACCAATAACACCATCTGAAGAGGAGGAAAGACTAAATCGCAGGTCTAGGAGTGCCAAACTCCGTGTGATTGAGAAAA
TTCGTTGA
AA sequence
>Potri.005G179700.1 pacid=42804756 polypeptide=Potri.005G179700.1.p locus=Potri.005G179700 ID=Potri.005G179700.1.v4.1 annot-version=v4.1
MAKRMMYCWLSTPLSTAKQRFNIKTAPSFSRPVLASARAERSISTASKKKKKKERNKSVEELVVVKNDKEKRRTRSEKEYEELHSFHETESHVPVMLGEV
VDVFSSLPLRSFIDCTLGAAGHSSAIIKGHPELECYIGMDVDPVAHAKARAHIDALLQSTRTSLKPHLLFKNFKYIKSVVGEIGDDCKLLSSGVDGILMD
LGMSSMQVNNPQRGFSVLANGPLDMRMDPRASVKAKDILNYWPDDEVGRILREYGEESNWRWLQKKIVQARQQGGLHSTSELRDLIQGATHGTKGGRQGW
IKTATRVFQALRIAVNDELNTLEKSLHACFECLVPGGRLAVISFHSLEDRIVKQTFLKIIESNGGDGDVVEEEAGKRDLRKMRNDIDAKETWIRQMVQGQ
NGTILTKRPITPSEEEERLNRRSRSAKLRVIEKIR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G10910 mraW methylase family protein ... Potri.005G179700
[exp]
0 1
AT2G29150 NAD(P)-binding Rossmann-fold s... Potri.005G039300
[exp]
3.00 0.9316
AT2G21370 XK1, XK-1 XYLULOSE KINASE 1, xylulose ki... Potri.009G122300
[exp]
8.48 0.9361
AT4G31560 HCF153 high chlorophyll fluorescence ... Potri.001G022500
[exp]
8.54 0.9363
AT4G33350 AtTic22-IV translocon at the inner envelo... Potri.014G030000
[exp]
14.49 0.8790
Potri.010G114100
[exp]
16.88 0.8719
AT2G42920 Pentatricopeptide repeat (PPR-... Potri.005G202600
[exp]
18.43 0.9251
AT5G24910 ELA1, CYP714A1 EUI-like p450 A1, cytochrome P... Potri.014G052000
[exp]
20.49 0.9016
AT2G33180 unknown protein Potri.001G053700
[exp]
26.07 0.9284
AT5G22340 unknown protein Potri.009G160500
[exp]
35.62 0.9221
AT1G52220 unknown protein Potri.003G052200
[exp]
40.39 0.9200

Potri.005G179700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.