Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31115 205 / 5e-66 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2) AT5G04440 81 / 6e-18 Protein of unknown function (DUF1997) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G030300 [exp] 88 / 9e-21 AT5G04440 342 / 5e-120 Protein of unknown function (DUF1997) (.1) Potri.010G230900 [exp] 82 / 1e-18 AT5G04440 330 / 2e-115 Protein of unknown function (DUF1997) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026864 [exp] 256 / 4e-86 AT4G31115 244 / 2e-81 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2) Lus10025683 [exp] 163 / 3e-50 AT4G31115 159 / 1e-48 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2) Lus10018151 [exp] 154 / 6e-47 AT4G31115 156 / 1e-47 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2) Lus10038659 [exp] 92 / 4e-22 AT5G04440 345 / 6e-121 Protein of unknown function (DUF1997) (.1) Lus10037929 [exp] 86 / 2e-19 AT5G04440 342 / 1e-118 Protein of unknown function (DUF1997) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09366 [poplar] [flax] DUF1997 Protein of unknown function (DUF1997)
Representative CDS sequence Show only first row Show all	>Potri.005G179800.2 pacid=42804272 polypeptide=Potri.005G179800.2.p locus=Potri.005G179800 ID=Potri.005G179800.2.v4.1 annot-version=v4.1 ATGATGGTACCAAGTGGTAACAAATGGAAAGCAACAGGGAAAGAAGGCTTGACAACATTCACATCTTTTGCTTTCCCATACCTCACCAATTCCAGGAAAA GAAAAGAAACTGTCAATGTACGTAGAGCCAATATGGCAGTGTATAACTCAAAGAAAGCAAATTTAACTGCTGCAAGAAAGGAAAGGATGAATTTGCCGAT TACCGATGGCGGTTATCGTATCAGTGAATTTCTAAGTCACCCGTTTGGGATTCAAGCTATATTGAACACGGGTAGTTTGCAAAGTTTTCAGTCACTTGAT GCCAACACATATAGGTGCATTTTGCCGAAGGTTGAACTTCTTAACTTTGAAGCAGCACCTGTGCTAGACTTACGAGTTTCCCCATCAGACGAACATTGCA CTGTTGAGATGATTTCTTGCAAGTTCCAAGGTTCAGAGCTTGTGGAACGCCAAAATGACCGTTTTTCAGCTTTCATGGTGAACTCCATGACATGGAACAC AAATATCTCTGAACCATTTTTGGAGGTTGACGTGAAGTTGAATCTCATGCTTGAGATTTACACACAGCCCTTTACTTTGCTGCCAACATCTGCTGTGGAG AGTGCTGGAAATTTAGTAATGCAAGCTCTTCTGGATAGGCTCGTACCATTACTTCTTGAGCAACTGCTGCTAGACTATAACAAGTGGACAAATCAACACC GTGCAGTTATTCCATGA
AA sequence Show only first row Show all	>Potri.005G179800.2 pacid=42804272 polypeptide=Potri.005G179800.2.p locus=Potri.005G179800 ID=Potri.005G179800.2.v4.1 annot-version=v4.1 MMVPSGNKWKATGKEGLTTFTSFAFPYLTNSRKRKETVNVRRANMAVYNSKKANLTAARKERMNLPITDGGYRISEFLSHPFGIQAILNTGSLQSFQSLD ANTYRCILPKVELLNFEAAPVLDLRVSPSDEHCTVEMISCKFQGSELVERQNDRFSAFMVNSMTWNTNISEPFLEVDVKLNLMLEIYTQPFTLLPTSAVE SAGNLVMQALLDRLVPLLLEQLLLDYNKWTNQHRAVIP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31115			Protein of unknown function (D...		Potri.005G179800 [exp]	0	1
AT1G42960			unknown protein		Potri.005G254200 [exp]	2.23	0.9321
AT5G24690			Protein of unknown function (D...		Potri.001G210500 [exp]	4.58	0.9079
					Potri.013G093450 [exp]	8.06	0.9092
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Potri.011G150700 [exp]	9.59	0.8907
AT3G22210			unknown protein		Potri.006G021100 [exp]	10.77	0.9173
AT3G56940		CRD1, CHL27, AC...	COPPER RESPONSE DEFECT 1, dica...		Potri.016G025000 [exp]	13.56	0.9223	AT103.1
AT1G21500			unknown protein		Potri.013G128700 [exp]	19.20	0.9053
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Potri.011G106100 [exp]	19.36	0.9181
AT3G04760			Pentatricopeptide repeat (PPR-...		Potri.019G019300 [exp]	20.24	0.8810
AT3G47470		CAB4, LHCA4	light-harvesting chlorophyll-p...		Potri.015G062200 [exp]	23.15	0.9068	CAB4.1

Compare expression of checked genes

Potri.005G179800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.