Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44130 501 / 2e-177 Eukaryotic aspartyl protease family protein (.1) AT1G77480 476 / 3e-167 Eukaryotic aspartyl protease family protein (.1.2) AT4G33490 419 / 6e-145 Eukaryotic aspartyl protease family protein (.1.2) AT1G49050 305 / 2e-98 Eukaryotic aspartyl protease family protein (.1.2) AT5G43100 137 / 5e-35 Eukaryotic aspartyl protease family protein (.1) AT1G65240 132 / 9e-34 Eukaryotic aspartyl protease family protein (.1) AT3G02740 129 / 9e-33 Eukaryotic aspartyl protease family protein (.1) AT3G50050 127 / 1e-31 Eukaryotic aspartyl protease family protein (.1) AT2G36670 124 / 5e-31 Eukaryotic aspartyl protease family protein (.1.2) AT5G36260 122 / 2e-30 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G081400 [exp] 743 / 0 AT1G44130 449 / 1e-156 Eukaryotic aspartyl protease family protein (.1) Potri.005G069600 [exp] 407 / 6e-140 AT4G33490 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G099200 [exp] 405 / 4e-139 AT4G33490 521 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G099301 [exp] 390 / 3e-133 AT4G33490 503 / 6e-178 Eukaryotic aspartyl protease family protein (.1.2) Potri.015G053300 [exp] 312 / 6e-101 AT1G49050 611 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.019G054900 [exp] 139 / 1e-36 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G020200 [exp] 134 / 4e-34 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G144600 [exp] 127 / 1e-31 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 125 / 2e-31 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025687 [exp] 508 / 6e-180 AT1G77480 463 / 5e-162 Eukaryotic aspartyl protease family protein (.1.2) Lus10018146 [exp] 507 / 3e-179 AT1G77480 460 / 1e-160 Eukaryotic aspartyl protease family protein (.1.2) Lus10033503 [exp] 412 / 6e-142 AT4G33490 560 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10020874 [exp] 411 / 1e-140 AT4G33490 563 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10042982 [exp] 301 / 7e-97 AT1G49050 569 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10018148 [exp] 239 / 8e-76 AT1G44130 227 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10032485 [exp] 236 / 2e-72 AT1G49050 475 / 6e-163 Eukaryotic aspartyl protease family protein (.1.2) Lus10018709 [exp] 135 / 3e-34 AT5G43100 841 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10024792 [exp] 134 / 4e-34 AT5G43100 839 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10014391 [exp] 130 / 8e-33 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14543 [poplar] [flax] TAXi_N Xylanase inhibitor N-terminal
Representative CDS sequence Show only first row Show all	>Potri.005G179900.1 pacid=42804022 polypeptide=Potri.005G179900.1.p locus=Potri.005G179900 ID=Potri.005G179900.1.v4.1 annot-version=v4.1 ATGGAAAAGAAAAGCAAAAGAAGCGTATCATTGATGATGATGATGTTCTTGTTCTTCATAGTAATATCTGCTGATTTTCAAGGCTGTTTCTCTGCTGCCA GTCAAACACCCATCAAAGGAGAGTCAAGCACCCCTGCTAATGATCGTGTTGGCTCCTCTGTTTTCTTTCGTGTCACCGGAAATGTTTATCCTACTGGGTA CTACTCTGTGATTCTCAACATAGGCAACCCACCAAAGGCTTTTGACTTTGACATAGATACTGGAAGCGACCTCACCTGGGTCCAGTGTGATGCTCCATGC AAAGGTTGCACCAAGCCACGTGATAAGCTTTACAAACCAAAGAACAATCTTGTGCCTTGTTCAAATTCCTTATGCCAGGCCGTCAGCACAGGGGAAAACT ACCATTGCGACGCCCCAGATGACCAGTGTGACTATGAAATCGAGTATGCTGATCTTGGTTCATCTATTGGTGTGCTGCTGTCTGACTCCTTTCCGCTAAG ATTATCCAATGGCACTCTTCTCCAGCCTAAAATGGCCTTTGGGTGTGGATATGATCAAAAACATCTTGGCCCACACCCACCTCCTGACACAGCTGGGATT CTTGGCCTTGGCAGAGGTAAAGTAAGCATTCTTTCACAGCTACGAACCCTGGGTATCACGCAAAATGTGGTTGGCCACTGTTTCAGTAGGGCAAGGGGAG GCTTTTTATTCTTTGGAGATCATCTTTTTCCATCTTCAGGAATCACCTGGACACCAATGCTACGCAGTTCATCAGACACACTATACTCATCAGGACCAGC AGAACTTCTTTTTGGTGGAAAGCCCACTGGCATAAAGGGACTACAGCTTATTTTTGACAGTGGGAGCTCCTATACCTACTTCAATGCTCAAGTTTACCAG AGTATACTCAATCTGGTAAGGAAGGATCTTGCTGGAAAGCCATTAAAAGATGCACCAGAGGAGAAGGAACTTGCAGTATGCTGGAAAACTGCAAAACCTA TCAAATCTATTCTTGATATCAAGAGTTACTTCAAGCCCTTAACCATAAGCTTTATGAATGCAAAAAATGTGCAGCTGCAGTTGGCACCTGAAGACTATCT GATCATCACTAAGGATGGGAATGTGTGTTTAGGGATTCTGAATGGCAGCGAGCAACATCTGGGAAACTTCAATGTGATTGGAGATATTTTTATGCAAGAC AGAGTGGTGATTTATGACAATGAGAAACAACAGATCGGATGGTTCCCTGCAAATTGCGATAGACTTCCCCAGTCCTGA
AA sequence Show only first row Show all	>Potri.005G179900.1 pacid=42804022 polypeptide=Potri.005G179900.1.p locus=Potri.005G179900 ID=Potri.005G179900.1.v4.1 annot-version=v4.1 MEKKSKRSVSLMMMMFLFFIVISADFQGCFSAASQTPIKGESSTPANDRVGSSVFFRVTGNVYPTGYYSVILNIGNPPKAFDFDIDTGSDLTWVQCDAPC KGCTKPRDKLYKPKNNLVPCSNSLCQAVSTGENYHCDAPDDQCDYEIEYADLGSSIGVLLSDSFPLRLSNGTLLQPKMAFGCGYDQKHLGPHPPPDTAGI LGLGRGKVSILSQLRTLGITQNVVGHCFSRARGGFLFFGDHLFPSSGITWTPMLRSSSDTLYSSGPAELLFGGKPTGIKGLQLIFDSGSSYTYFNAQVYQ SILNLVRKDLAGKPLKDAPEEKELAVCWKTAKPIKSILDIKSYFKPLTISFMNAKNVQLQLAPEDYLIITKDGNVCLGILNGSEQHLGNFNVIGDIFMQD RVVIYDNEKQQIGWFPANCDRLPQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G44130			Eukaryotic aspartyl protease f...		Potri.005G179900 [exp]	0	1
AT1G17665			unknown protein		Potri.003G038600 [exp]	9.48	0.7431
AT1G19860	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.005G116001 [exp]	12.12	0.7550
AT5G13590			unknown protein		Potri.010G213800 [exp]	18.89	0.7192
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.001G007501 [exp]	21.84	0.7288
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G219600 [exp]	24.49	0.7081
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Potri.009G086100 [exp]	26.72	0.6917
AT1G68580			agenet domain-containing prote...		Potri.010G126700 [exp]	27.74	0.7014
AT3G07690			6-phosphogluconate dehydrogena...		Potri.003G203800 [exp]	30.98	0.6875
AT5G49300	GATA	GATA16	GATA transcription factor 16 (...		Potri.002G199800 [exp]	31.12	0.6564
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093833 [exp]	33.67	0.6890

Compare expression of checked genes

Potri.005G179900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.