Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATAF1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01720 393 / 7e-139 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G77450 323 / 9e-112 NAC ANAC032 NAC domain containing protein 32 (.1) AT5G08790 305 / 3e-104 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G63790 298 / 3e-101 NAC ANAC102 NAC domain containing protein 102 (.1) AT3G15500 238 / 2e-77 NAC ATNAC3, ANAC055 NAC domain containing protein 55, NAC domain containing protein 3 (.1) AT1G52890 236 / 6e-77 NAC ANAC019 NAC domain containing protein 19 (.1) AT4G27410 235 / 1e-76 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT1G61110 229 / 4e-74 NAC ANAC025 NAC domain containing protein 25 (.1) AT3G04070 228 / 2e-73 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT3G15510 225 / 7e-72 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G081000 [exp] 520 / 0 AT1G01720 416 / 5e-148 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.005G069500 [exp] 375 / 1e-131 AT1G01720 357 / 3e-124 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.007G099400 [exp] 375 / 2e-131 AT1G01720 366 / 6e-128 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.011G123300 [exp] 240 / 6e-78 AT4G27410 354 / 2e-122 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.011G123500 [exp] 239 / 1e-77 AT3G15510 323 / 4e-109 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.001G404400 [exp] 239 / 2e-77 AT3G15510 345 / 1e-117 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.004G038000 [exp] 238 / 5e-77 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.001G404100 [exp] 237 / 9e-77 AT4G27410 370 / 8e-129 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.011G046700 [exp] 235 / 6e-76 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025690 [exp] 415 / 2e-147 AT1G01720 405 / 1e-143 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10018142 [exp] 412 / 5e-146 AT1G01720 401 / 7e-142 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10042731 [exp] 375 / 1e-131 AT1G01720 414 / 7e-147 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10020883 [exp] 317 / 8e-109 AT5G08790 320 / 6e-110 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10033493 [exp] 310 / 3e-106 AT5G08790 315 / 4e-108 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10029692 [exp] 250 / 1e-82 AT1G01720 268 / 9e-90 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10032657 [exp] 241 / 8e-78 AT3G15510 353 / 1e-120 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10043095 [exp] 240 / 2e-77 AT3G15510 351 / 1e-119 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10018469 [exp] 238 / 4e-77 AT1G61110 301 / 5e-101 NAC domain containing protein 25 (.1) Lus10011215 [exp] 237 / 1e-76 AT1G61110 305 / 1e-102 NAC domain containing protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.005G180200.1 pacid=42802998 polypeptide=Potri.005G180200.1.p locus=Potri.005G180200 ID=Potri.005G180200.1.v4.1 annot-version=v4.1 ATGACAGCGGCGACACTAGAGTTACCACCAGGTTTCAGGTTCCATCCAACGGATGAGGAGCTCGTGCTGCACTATCTCTGCCGTAAATGCTCATCGCAGC CCATTGCTGTTCCTATTATTGCTGAAGTTGATCTCTACAAGTTTGACCCATGGGATCTCCCTGGTATGGCCTTGTACGGAGAAAAGGAATGGTACTTTTT TACGCCGAGGGACAGGAAGTACCCTAACGGATCGAGACCGAATCGTGCTGCAGGGAGGGGCTACTGGAAAGCCACGGGAGCCGACAAGCCGATCGGGCAG CCAAAGACAGCTGGGATCAAGAAAGCTTTGGTATTTTACGCAGGAAAAGCTCCCAAGGGAGAGAAAACGAACTGGATTATGCACGAGTATCGCCTAGCCG AGGTGGATCGCTCCGTTCGCAAGAAGAACAGCTTAAGGCTGGACGATTGGGTACTCTGTCGCATACACAACAAGAAAGGCACAATTGAGAAGCAAGGGCA GCATCTTAGCGTCCAGAAAGCGAATTCGTCGACGGAGATTGCCGAGGAGGATGAGAAGAAGTCGGTGGTTATGCTGCCGCCACCACCAGGCCCGTCCTCG GCGACAGGAACGGTGAATGATTACGTCTATTTCGACACGTCAGATTCTGTGCCGAGGCTGCACACAGATTCGAGCTGCTCGGAGCATGTGGTGTCGCCAG AATTCACGTGCGAGGTGCAGAGCAATCCTTATAATTACTTGGATGCCACCATGGATATTCCGTTCGCGTCTCAATTTCAGGGGAATCATCAGATGTCGCC GCTTCAGGACATGTTCATGTATCTGCAGAAGCCGTTTTGA
AA sequence Show only first row Show all	>Potri.005G180200.1 pacid=42802998 polypeptide=Potri.005G180200.1.p locus=Potri.005G180200 ID=Potri.005G180200.1.v4.1 annot-version=v4.1 MTAATLELPPGFRFHPTDEELVLHYLCRKCSSQPIAVPIIAEVDLYKFDPWDLPGMALYGEKEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPIGQ PKTAGIKKALVFYAGKAPKGEKTNWIMHEYRLAEVDRSVRKKNSLRLDDWVLCRIHNKKGTIEKQGQHLSVQKANSSTEIAEEDEKKSVVMLPPPPGPSS ATGTVNDYVYFDTSDSVPRLHTDSSCSEHVVSPEFTCEVQSNPYNYLDATMDIPFASQFQGNHQMSPLQDMFMYLQKPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Potri.005G180200 [exp]	0	1	Pt-ATAF1.1
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Potri.015G019800 [exp]	3.16	0.9412
AT1G53440			Leucine-rich repeat transmembr...		Potri.003G025632 [exp]	3.87	0.9270
AT4G25160			U-box domain-containing protei...		Potri.004G233000 [exp]	4.00	0.9279
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Potri.006G022000 [exp]	4.69	0.9354
AT3G27320			alpha/beta-Hydrolases superfam...		Potri.008G180500 [exp]	6.92	0.9258
AT5G19080			RING/U-box superfamily protein...		Potri.013G025400 [exp]	6.92	0.9179
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.003G169100 [exp]	8.66	0.9283
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Potri.004G007500 [exp]	9.89	0.9227	Pt-WRKY6.1
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Potri.002G236500 [exp]	10.58	0.9168
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.015G064100 [exp]	10.95	0.9212

Compare expression of checked genes

Potri.005G180200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.